| RAACBook: a web server of reduced amino acid alphabet for sequence-dependent inference by using Chou’s five-step rule L Zheng, S Huang, N Mu, H Zhang, J Zhang, Y Chang, L Yang, Y Zuo Database 2019, baz131, 2019 | 67 | 2019 |
| iProbiotics: a machine learning platform for rapid identification of probiotic properties from whole-genome primary sequences Y Sun, H Li, L Zheng, J Li, Y Hong, P Liang, LY Kwok, Y Zuo, W Zhang, ... Briefings in Bioinformatics 23 (1), bbab477, 2022 | 49 | 2022 |
| RaacLogo: a new sequence logo generator by using reduced amino acid clusters L Zheng, D Liu, W Yang, L Yang, Y Zuo Briefings in Bioinformatics 22 (3), bbaa096, 2021 | 48 | 2021 |
| EmExplorer: a database for exploring time activation of gene expression in mammalian embryos B Hu, L Zheng, C Long, M Song, T Li, L Yang, Y Zuo Open biology 9 (6), 190054, 2019 | 37 | 2019 |
| Machine learning of single-cell transcriptome highly identifies mRNA signature by comparing F-score selection with DGE analysis P Liang, W Yang, X Chen, C Long, L Zheng, H Li, Y Zuo Molecular Therapy-Nucleic Acids 20, 155-163, 2020 | 35 | 2020 |
| eHSCPr discriminating the cell identity involved in endothelial to hematopoietic transition H Wang, P Liang, L Zheng, CS Long, HS Li, Y Zuo Bioinformatics 37 (15), 2157-2164, 2021 | 31 | 2021 |
| Analysis of the epigenetic signature of cell reprogramming by computational DNA methylation profiles Y Zuo, M Song, H Li, X Chen, P Cao, L Zheng, G Cao Current Bioinformatics 15 (6), 589-599, 2020 | 23 | 2020 |
| Amino acid reduction can help to improve the identification of antimicrobial peptides and their functional activities GF Dong, L Zheng, SH Huang, J Gao, YC Zuo Frontiers in Genetics 12, 669328, 2021 | 21 | 2021 |
| A comparative analysis of single-cell transcriptome identifies reprogramming driver factors for efficiency improvement H Li, M Song, W Yang, P Cao, L Zheng, Y Zuo Molecular Therapy-Nucleic Acids 19, 1053-1064, 2020 | 19 | 2020 |
| Research progress of reduced amino acid alphabets in protein analysis and prediction Y Liang, S Yang, L Zheng, H Wang, J Zhou, S Huang, L Yang, Y Zuo Computational and Structural Biotechnology Journal 20, 3503-3510, 2022 | 18 | 2022 |
| RaacFold: a webserver for 3D visualization and analysis of protein structure by using reduced amino acid alphabets L Zheng, D Liu, YA Li, S Yang, Y Liang, Y Xing, Y Zuo Nucleic Acids Research 50 (W1), W633-W638, 2022 | 16 | 2022 |
| iDEF-PseRAAC: identifying the defensin peptide by using reduced amino acid composition descriptor Y Zuo, Y Chang, S Huang, L Zheng, L Yang, G Cao Evolutionary Bioinformatics 15, 1176934319867088, 2019 | 15 | 2019 |
| IHEC_RAAC: a online platform for identifying human enzyme classes via reduced amino acid cluster strategy H Wang, Q Xi, P Liang, L Zheng, Y Hong, Y Zuo Amino Acids 53, 239-251, 2021 | 12 | 2021 |
| EmAtlas: a comprehensive atlas for exploring spatiotemporal activation in mammalian embryogenesis L Zheng, P Liang, C Long, H Li, H Li, Y Liang, X He, Q Xi, Y Xing, Y Zuo Nucleic acids research 51 (D1), D924-D932, 2023 | 11 | 2023 |
| HelPredictor models single-cell transcriptome to predict human embryo lineage allocation P Liang, L Zheng, C Long, W Yang, L Yang, Y Zuo Briefings in bioinformatics 22 (6), bbab196, 2021 | 11 | 2021 |
| iSP-RAAC: Identify secretory proteins of malaria parasite using reduced amino acid composition H Zhang, Q Xi, S Huang, L Zheng, W Yang, Y Zuo Combinatorial Chemistry & High Throughput Screening 23 (6), 536-545, 2020 | 9 | 2020 |
| ICTC-RAAC: An improved web predictor for identifying the types of ion channel-targeted conotoxins by using reduced amino acid cluster descriptors Z Sun, S Huang, L Zheng, P Liang, W Yang, Y Zuo Computational Biology and Chemistry 89, 107371, 2020 | 6 | 2020 |
| Identification of disease-related 2-oxoglutarate/Fe (II)-dependent oxygenase based on reduced amino acid cluster strategy J Zhou, S Bo, H Wang, L Zheng, P Liang, Y Zuo Frontiers in Cell and Developmental Biology 9, 707938, 2021 | 5 | 2021 |
