关注
Gregory A. Ross
Gregory A. Ross
Research Leader, Isomorphic Labs
在 isomorphiclabs.com 的电子邮件经过验证
标题
引用次数
引用次数
年份
OPLS4: Improving force field accuracy on challenging regimes of chemical space
C Lu, C Wu, D Ghoreishi, W Chen, L Wang, W Damm, GA Ross, ...
Journal of chemical theory and computation 17 (7), 4291-4300, 2021
7982021
Rapid and accurate prediction and scoring of water molecules in protein binding sites
GA Ross, GM Morris, PC Biggin
PloS one 7 (3), e32036, 2012
2092012
Water sites, networks, and free energies with grand canonical Monte Carlo
GA Ross, MS Bodnarchuk, JW Essex
Journal of the American Chemical Society 137 (47), 14930-14943, 2015
1252015
Biomolecular simulations under realistic macroscopic salt conditions
GA Ross, AS Rustenburg, PB Grinaway, J Fass, JD Chodera
The Journal of Physical Chemistry B 122 (21), 5466-5486, 2018
822018
Binding modes of ligands using enhanced sampling (BLUES): rapid decorrelation of ligand binding modes via nonequilibrium candidate Monte Carlo
SC Gill, NM Lim, PB Grinaway, AS Rustenburg, J Fass, GA Ross, ...
The Journal of Physical Chemistry B 122 (21), 5579-5598, 2018
742018
Large-scale analysis of water stability in bromodomain binding pockets with grand canonical Monte Carlo
M Aldeghi, GA Ross, MJ Bodkin, JW Essex, S Knapp, PC Biggin
Communications chemistry 1 (1), 19, 2018
662018
Enhancing water sampling in free energy calculations with grand canonical Monte Carlo
GA Ross, E Russell, Y Deng, C Lu, ED Harder, R Abel, L Wang
Journal of chemical theory and computation 16 (10), 6061-6076, 2020
622020
One size does not fit all: the limits of structure-based models in drug discovery
GA Ross, GM Morris, PC Biggin
Journal of chemical theory and computation 9 (9), 4266-4274, 2013
622013
Waterdock 2.0: Water placement prediction for Holo-structures with a pymol plugin
A Sridhar, GA Ross, PC Biggin
PloS one 12 (2), e0172743, 2017
492017
Replica-exchange and standard state binding free energies with Grand Canonical Monte Carlo
GA Ross, HE Bruce Macdonald, C Cave-Ayland, AI Cabedo Martinez, ...
Journal of Chemical Theory and Computation 13 (12), 6373-6381, 2017
482017
Ligand binding free energies with adaptive water networks: two-dimensional grand canonical alchemical perturbations
HE Bruce Macdonald, C Cave-Ayland, GA Ross, JW Essex
Journal of chemical theory and computation 14 (12), 6586-6597, 2018
372018
The maximal and current accuracy of rigorous protein-ligand binding free energy calculations
GA Ross, C Lu, G Scarabelli, SK Albanese, E Houang, R Abel, ED Harder, ...
Communications Chemistry 6 (1), 222, 2023
242023
choderalab/openmmtools: 0.14. 0-Exact treatment of alchemical PME electrostatics, water cluster test system, optimizations
J Chodera, A Rizzi, L Naden, K Beauchamp, P Grinaway, J Fass, ...
doi. org/10.5281/zenod o 11611, 49, 2018
72018
ProtoMS
M Bodnarchuk, R Bradshaw, C Cave-Ayland, S Genheden, ...
University of Southampton, Southampton, UK, 2017
52017
11th German Conference on Chemoinformatics (GCC 2015)
U Fechner, C de Graaf, AE Torda, S Güssregen, A Evers, H Matter, ...
Journal of cheminformatics 8 (1), 1-27, 2016
22016
Advancing drug discovery with accurate and reliable protein-ligand binding free energy calculations
L Wang, W Chen, G Ross, D Cui, E Harder, R Abel
Biophysical Journal 122 (3), 325a-326a, 2023
2023
Role of water in protein-ligand binding: Water locations, network binding free energies, and structure-activity relationships by grand canonical Monte Carlo
J Essex, HB Macdonald, C Cave-Ayland, G Ross, M Samways, R Taylor
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 258, 2019
2019
Atomistic modeling of protein-ligand binding: Successes, limitations, and opportunities
R Abel, L Wang, E Harder, S Bhat, K Konze, K Leswing, P Bos, ...
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 257, 2019
2019
Incorporating changes in protein-ligand hydration in free energy calculations
J Essex, G Ross
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 251, 2016
2016
Old dog, new tricks: Free energy calculations with grand canonical Monte Carlo
GA Ross, MS Bodnarchuk, JW Essex
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 250, 2015
2015
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