From DNA human sequence to the chromatin higher order organisation and its biological meaning: Using biomolecular interaction networks to understand the influence of structural … M Chiliński, K Sengupta, D Plewczynski Seminars in Cell & Developmental Biology, 2022 | 18 | 2022 |
3DGenBench: a web-server to benchmark computational models for 3D Genomics Nucleic Acids Research 50 (W1), W4-W12, 2022 | 9 | 2022 |
ConsensuSV—from the whole-genome sequencing data to the complete variant list M Chiliński, D Plewczynski Bioinformatics 38 (24), 5440-5442, 2022 | 5 | 2022 |
Multi-scale phase separation by explosive percolation with single-chromatin loop resolution K Sengupta, M Denkiewicz, M Chiliński, T Szczepińska, AF Mollah, ... Computational and Structural Biotechnology Journal 20, 3591-3603, 2022 | 4 | 2022 |
Prediction of chromatin looping using deep hybrid learning (DHL) M Chiliński, AK Halder, D Plewczynski Quantitative Biology 11 (2), 155-162, 2023 | 3 | 2023 |
Enhanced performance of gene expression predictive models with protein-mediated spatial chromatin interactions M Chiliński, J Lipiński, A Agarwal, Y Ruan, D Plewczynski Scientific Reports 13 (1), 11693, 2023 | 2 | 2023 |
HiCDiffusion-diffusion-enhanced, transformer-based prediction of chromatin interactions from DNA sequences M Chiliński, D Plewczynski bioRxiv, 2024.02. 01.578389, 2024 | 1 | 2024 |
Hematopoietic stem cells undergo a lymphoid to myeloid switch in early stages of emergency granulopoiesis K Vanickova, M Milosevic, I Ribeiro Bas, M Burocziova, A Yokota, ... The EMBO Journal 42 (23), e113527, 2023 | 1 | 2023 |
Chromatin Image-driven modelling M Kadlof, K Banecki, M Chiliński, D Plewczynski Methods 226, 54-60, 2024 | | 2024 |
ConsensuSV-ONT-a modern method for accurate structural variant calling A Pietryga, M Chilinski, S Gadakh, D Plewczynski bioRxiv, 2024.07. 26.605267, 2024 | | 2024 |
Improved cohesin HiChIP protocol and bioinformatic analysis for robust detection of chromatin loops and stripes K Jodkowska, Z Parteka-Tojek, A Agarwal, M Denkiewicz, S Korsak, ... bioRxiv, 2024.05. 16.594268, 2024 | | 2024 |
Structural Variants and Implicated Processes Associated with Familial Tourette Syndrome JP Fichna, M Chiliński, AK Halder, P Cięszczyk, D Plewczynski, ... International Journal of Molecular Sciences 25 (11), 5758, 2024 | | 2024 |
Consensus-Based Identification and Comparative Analysis of Structural Variants and Their Influence on 3D Genome Structure Using Long- and Short-Read Sequencing Technologies in … M Chilinski, S Gadakh, K Sengupta, K Jodkowska, N Zawrotna, J Gawor, ... Proceedings of International Conference on Frontiers in Computing and …, 2022 | | 2022 |
FGVC8 based foliar diseases identification with use of multi-label classifiers M Chiliński, P Góralewski, T Lehmann, A Nowacki, J Stypułkowska International Journal of Computer Information Systems and Industrial …, 2022 | | 2022 |