The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20, 1-23, 2019 | 382 | 2019 |
Prediction of Human Phenotype Ontology terms by means of hierarchical ensemble methods M Notaro, M Schubach, PN Robinson, G Valentini BMC bioinformatics 18, 1-18, 2017 | 37 | 2017 |
Heterogeneous data integration methods for patient similarity networks J Gliozzo, M Mesiti, M Notaro, A Petrini, A Patak, A Puertas-Gallardo, ... Briefings in Bioinformatics 23 (4), bbac207, 2022 | 25 | 2022 |
A hierarchical ensemble method for dag-structured taxonomies PN Robinson, M Frasca, S Köhler, M Notaro, M Re, G Valentini Multiple Classifier Systems: 12th International Workshop, MCS 2015, Günzburg …, 2015 | 19 | 2015 |
A method for comparing multiple imputation techniques: a case study on the US national COVID cohort collaborative E Casiraghi, R Wong, M Hall, B Coleman, M Notaro, MD Evans, ... Journal of biomedical informatics 139, 104295, 2023 | 16* | 2023 |
Prediction of human gene-phenotype associations by exploiting the hierarchical structure of the human phenotype ontology G Valentini, S Köhler, M Re, M Notaro, PN Robinson Bioinformatics and Biomedical Engineering: Third International Conference …, 2015 | 15 | 2015 |
Ensembling descendant term classifiers to improve gene-abnormal phenotype predictions M Notaro, M Schubach, M Frasca, M Mesiti, PN Robinson, G Valentini International meeting on computational intelligence methods for …, 2017 | 11 | 2017 |
FZD6 triggers Wnt–signalling driven by WNT10BIVS1 expression and highlights new targets in T‐cell acute lymphoblastic leukemia A Cassaro, G Grillo, M Notaro, J Gliozzo, I Esposito, G Reda, A Trojani, ... Hematological oncology 39 (3), 364-379, 2021 | 9 | 2021 |
UNIPred-Web: a web tool for the integration and visualization of biomolecular networks for protein function prediction P Perlasca, M Frasca, CT Ba, M Notaro, A Petrini, E Casiraghi, G Grossi, ... Bmc Bioinformatics 20, 1-19, 2019 | 9 | 2019 |
Multi-resolution visualization and analysis of biomolecular networks through hierarchical community detection and web-based graphical tools P Perlasca, M Frasca, CT Ba, J Gliozzo, M Notaro, M Pennacchioni, ... Plos one 15 (12), e0244241, 2020 | 7 | 2020 |
A GPU-based algorithm for fast node label learning in large and unbalanced biomolecular networks M Frasca, G Grossi, J Gliozzo, M Mesiti, M Notaro, P Perlasca, A Petrini, ... BMC bioinformatics 19, 63-74, 2018 | 7 | 2018 |
Disease–Genes Must Guide Data Source Integration in the Gene Prioritization Process M Frasca, JF Fontaine, G Valentini, M Mesiti, M Notaro, D Malchiodi, ... International Meeting on Computational Intelligence Methods for …, 2017 | 4 | 2017 |
PDP1 is a key metabolic gatekeeper and modulator of drug resistance in FLT3-ITD-positive acute myeloid leukemia I Alshamleh, N Kurrle, P Makowka, R Bhayadia, R Kumar, S Süsser, ... Leukemia 37 (12), 2367-2382, 2023 | 2 | 2023 |
HEMDAG: a family of modular and scalable hierarchical ensemble methods to improve Gene Ontology term prediction M Notaro, M Frasca, A Petrini, J Gliozzo, E Casiraghi, PN Robinson, ... Bioinformatics 37 (23), 4526-4533, 2021 | 2 | 2021 |
A Graphical Tool for the Exploration and Visual Analysis of Biomolecular Networks CT Ba, E Casiraghi, M Frasca, J Gliozzo, G Grossi, M Mesiti, M Notaro, ... International Meeting on Computational Intelligence Methods for …, 2018 | 2 | 2018 |
Modeling biomolecular profiles in a graph-structured sample space for clinical outcome prediction with melanoma and ovarian cancer patients J Gliozzo, M Notaro, A Petrini, P Perlasca, M Mesiti, E Casiraghi, M Frasca, ... | 2 | 2017 |
Speeding up node label learning in unbalanced biomolecular networks through a parallel and sparse GPUbased Hopfield model A Petrini, M Notaro, J Gliozzo, G Valentini, G Grossi, M Frasca | 2 | 2017 |
TBX3 is essential for establishment of the posterior boundary of anterior genes and upregulation of posterior genes together with HAND2 during the onset of limb bud development G Soussi, A Girdziusaite, S Jhanwar, V Palacio, M Notaro, R Sheth, ... Development 151 (11), 2024 | | 2024 |
Integration and Visual Analysis of Biomolecular Networks Through UNIPred-Web P Perlasca, M Frasca, CT Ba, J Gliozzo, M Notaro, M Pennacchioni, ... International Conference on Web Engineering, 192-197, 2022 | | 2022 |
ParSMURF-NG: A Machine Learning High Performance Computing System for the Analysis of Imbalanced Big Omics Data A Petrini, M Notaro, J Gliozzo, T Castrignanò, PN Robinson, E Casiraghi, ... IFIP International Conference on Artificial Intelligence Applications and …, 2022 | | 2022 |