| Centromere evolution and CpG methylation during vertebrate speciation K Ichikawa, S Tomioka, Y Suzuki, R Nakamura, K Doi, J Yoshimura, ... Nature communications 8 (1), 1833, 2017 | 82 | 2017 |
| Whole-genome sequencing of the NARO World Rice Core Collection (WRC) as the basis for diversity and association studies N Tanaka, M Shenton, Y Kawahara, M Kumagai, H Sakai, H Kanamori, ... Plant and Cell Physiology 61 (5), 922-932, 2020 | 51 | 2020 |
| CTCF looping is established during gastrulation in medaka embryos R Nakamura, Y Motai, M Kumagai, CL Wike, H Nishiyama, Y Nakatani, ... Genome Research 31 (6), 968-980, 2021 | 45 | 2021 |
| Complete fusion of a transposon and herpesvirus created the Teratorn mobile element in medaka fish Y Inoue, T Saga, T Aikawa, M Kumagai, A Shimada, Y Kawaguchi, ... Nature communications 8 (1), 551, 2017 | 41 | 2017 |
| Genetic diversity and evolutionary relationships in genus Oryza revealed by using highly variable regions of chloroplast DNA M Kumagai, L Wang, S Ueda Gene 462 (1-2), 44-51, 2010 | 38 | 2010 |
| Development of transcriptome shotgun assembly-derived markers in bunching onion (Allium fistulosum) H Tsukazaki, S Yaguchi, S Sato, H Hirakawa, Y Katayose, H Kanamori, ... Molecular Breeding 35, 1-11, 2015 | 35 | 2015 |
| Tasuke: a web-based visualization program for large-scale resequencing data M Kumagai, J Kim, R Itoh, T Itoh Bioinformatics 29 (14), 1806-1808, 2013 | 35 | 2013 |
| TASUKE+: a web-based platform for exploring GWAS results and large-scale resequencing data M Kumagai, D Nishikawa, Y Kawahara, H Wakimoto, R Itoh, N Tabei, ... DNA Research 26 (6), 445-452, 2019 | 33 | 2019 |
| Same Locus for Non-shattering Seed Pod in Two Independently Domesticated Legumes, Vigna angularis and Vigna unguiculata Y Takahashi, A Kongjaimun, C Muto, Y Kobayashi, M Kumagai, H Sakai, ... Frontiers in genetics 11, 748, 2020 | 29 | 2020 |
| Antimicrobial resistance genes in bacteria isolated from Japanese honey, and their potential for conferring macrolide and lincosamide resistance in the American foulbrood … M Okamoto, M Kumagai, H Kanamori, D Takamatsu Frontiers in Microbiology 12, 667096, 2021 | 24 | 2021 |
| Investigation of the genetic diversity of a rice core collection of Japanese landraces using whole-genome sequencing N Tanaka, M Shenton, Y Kawahara, M Kumagai, H Sakai, H Kanamori, ... Plant and Cell Physiology 61 (12), 2087-2096, 2020 | 24 | 2020 |
| Whole-Genome Analysis of Herbicide-Tolerant Mutant Rice Generated by Agrobacterium-Mediated Gene Targeting M Endo, M Kumagai, R Motoyama, H Sasaki-Yamagata, ... Plant and Cell Physiology 56 (1), 116-125, 2015 | 23 | 2015 |
| Fusion of piggyBac-like transposons and herpesviruses occurs frequently in teleosts Y Inoue, M Kumagai, X Zhang, T Saga, D Wang, A Koga, H Takeda Zoological letters 4, 1-14, 2018 | 21 | 2018 |
| Rice varieties in archaic east Asia: reduction of its diversity from past to present times M Kumagai, M Kanehara, S Shoda, S Fujita, S Onuki, S Ueda, L Wang Molecular Biology and Evolution 33 (10), 2496-2505, 2016 | 20 | 2016 |
| Population dynamics in the Japanese Archipelago since the Pleistocene revealed by the complete mitochondrial genome sequences F Mizuno, J Gojobori, M Kumagai, H Baba, Y Taniguchi, O Kondo, ... Scientific reports 11 (1), 12018, 2021 | 15 | 2021 |
| Prevotella lacticifex sp. nov., isolated from the rumen of cows T Shinkai, N Ikeyama, M Kumagai, H Ohmori, M Sakamoto, M Ohkuma, ... International Journal of Systematic and Evolutionary Microbiology 72 (3), 005278, 2022 | 11 | 2022 |
| Hypomethylated domain-enriched DNA motifs prepattern the accessible nucleosome organization in teleosts R Nakamura, A Uno, M Kumagai, S Morishita, H Takeda Epigenetics & Chromatin 10, 1-13, 2017 | 11 | 2017 |
| Imputation approach for deducing a complete mitogenome sequence from low-depth-coverage next-generation sequencing data: application to ancient remains from the Moon Pyramid … F Mizuno, M Kumagai, K Kurosaki, M Hayashi, S Sugiyama, S Ueda, ... Journal of human genetics 62 (6), 631-635, 2017 | 11 | 2017 |
| Genetic factor for twisting legume pods identified by fine-mapping of shattering-related traits in azuki bean and yard-long bean Y Takahashi, A Kongjaimun, C Muto, Y Kobayashi, M Kumagai, H Sakai, ... BioRxiv, 774844, 2019 | 10 | 2019 |
| Draft genome sequence of Brucella ceti isolated in the Western Pacific Ocean Y Ueno, M Kumagai, H Kanamori, M Yanagisawa, S Kino, S Shigeno, ... Microbiology Resource Announcements 9 (39), 10.1128/mra. 00925-20, 2020 | 4 | 2020 |
