| Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement BJ Walker, T Abeel, T Shea, M Priest, A Abouelliel, S Sakthikumar, ... PloS one 9 (11), e112963, 2014 | 7184 | 2014 |
| Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium LJ Ma, HC Van Der Does, KA Borkovich, JJ Coleman, MJ Daboussi, ... Nature 464 (7287), 367-373, 2010 | 1698 | 2010 |
| Evolution of pathogenicity and sexual reproduction in eight Candida genomes G Butler, MD Rasmussen, MF Lin, MAS Santos, S Sakthikumar, CA Munro, ... Nature 459 (7247), 657-662, 2009 | 1198 | 2009 |
| Obligate biotrophy features unraveled by the genomic analysis of rust fungi S Duplessis, CA Cuomo, YC Lin, A Aerts, E Tisserant, C Veneault-Fourrey, ... Proceedings of the National Academy of Sciences 108 (22), 9166-9171, 2011 | 783 | 2011 |
| Genetic and phenotypic intra-species variation in Candida albicans MP Hirakawa, DA Martinez, S Sakthikumar, MZ Anderson, A Berlin, ... Genome research 25 (3), 413-425, 2015 | 294 | 2015 |
| Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis CA Desjardins, MD Champion, JW Holder, A Muszewska, J Goldberg, ... PLoS genetics 7 (10), e1002345, 2011 | 203 | 2011 |
| Comparative analysis highlights variable genome content of wheat rusts and divergence of the mating loci CA Cuomo, G Bakkeren, HB Khalil, V Panwar, D Joly, R Linning, ... G3: Genes, Genomes, Genetics 7 (2), 361-376, 2017 | 143 | 2017 |
| Genome Diversity, Recombination, and Virulence across the Major Lineages of Paracoccidioides JF Muñoz, RA Farrer, CA Desjardins, JE Gallo, S Sykes, S Sakthikumar, ... MSphere 1 (5), 10.1128/msphere. 00213-16, 2016 | 116 | 2016 |
| Tracing Genetic Exchange and Biogeography of Cryptococcus neoformans var. grubii at the Global Population Level J Rhodes, CA Desjardins, SM Sykes, MA Beale, M Vanhove, ... Genetics 207 (1), 327-346, 2017 | 103 | 2017 |
| Genome evolution and innovation across the four major lineages of Cryptococcus gattii RA Farrer, CA Desjardins, S Sakthikumar, S Gujja, S Saif, Q Zeng, Y Chen, ... MBio 6 (5), 10.1128/mbio. 00868-15, 2015 | 103 | 2015 |
| SETD2 Is Recurrently Mutated in Whole-Exome Sequenced Canine Osteosarcoma S Sakthikumar, I Elvers, J Kim, ML Arendt, R Thomas, J Turner-Maier, ... Cancer research 78 (13), 3421-3431, 2018 | 95 | 2018 |
| Comparative genomics reveals shared mutational landscape in canine hemangiosarcoma and human angiosarcoma K Megquier, J Turner-Maier, R Swofford, JH Kim, AL Sarver, C Wang, ... Molecular Cancer Research 17 (12), 2410-2421, 2019 | 87 | 2019 |
| Microevolution of Serial Clinical Isolates of Cryptococcus neoformans var. grubii and C. gattii Y Chen, RA Farrer, C Giamberardino, S Sakthikumar, A Jones, T Yang, ... MBio 8 (2), 10.1128/mbio. 00166-17, 2017 | 78 | 2017 |
| Whole-genome sequencing of glioblastoma reveals enrichment of non-coding constraint mutations in known and novel genes S Sakthikumar, A Roy, L Haseeb, ME Pettersson, E Sundström, ... Genome biology 21, 1-22, 2020 | 54 | 2020 |
| Leveraging base-pair mammalian constraint to understand genetic variation and human disease PF Sullivan, JRS Meadows, S Gazal, BDN Phan, X Li, DP Genereux, ... Science 380 (6643), eabn2937, 2023 | 44 | 2023 |
| Comparative genomics integrated with association analysis identifies candidate effector genes corresponding to Lr20 in phenotype-paired Puccinia triticina isolates from Australia JQ Wu, S Sakthikumar, C Dong, P Zhang, CA Cuomo, RF Park Frontiers in plant science 8, 148, 2017 | 44 | 2017 |
| Identification of the Mating-Type (MAT) Locus That Controls Sexual Reproduction of Blastomyces dermatitidis W Li, TD Sullivan, E Walton, AF Averette, S Sakthikumar, CA Cuomo, ... Eukaryotic Cell 12 (1), 109-117, 2013 | 41 | 2013 |
| From the Cover: Obligate biotrophy features unraveled by the genomic analysis of rust fungi S Duplessis, CA Cuomo, YC Lin, A Aerts, E Tisserant, C Veneault-Fourrey, ... Proceedings of the National Academy of Sciences of the United States of …, 2011 | 20 | 2011 |
| Whole-genome sequencing of multiple isolates of Puccinia triticina reveals asexual lineages evolving by recurrent mutations JP Fellers, S Sakthikumar, F He, K McRell, G Bakkeren, CA Cuomo, ... G3 11 (9), jkab219, 2021 | 14 | 2021 |
| Microevolution of serial clinical isolates of Cryptococcus neoformans var. grubii and C. gattii. mBio 8: e00166-17 Y Chen, RA Farrer, C Giamberardino, S Sakthikumar, A Jones, T Yang, ... | 11 | 2017 |
