| Genome Detective: an automated system for virus identification from high-throughput sequencing data M Vilsker, Y Moosa, S Nooij, V Fonseca, Y Ghysens, K Dumon, ... Bioinformatics 35 (5), 871-873, 2019 | 363 | 2019 |
| Overview of virus metagenomic classification methods and their biological applications S Nooij, D Schmitz, H Vennema, A Kroneman, MPG Koopmans Frontiers in microbiology 9, 749, 2018 | 134 | 2018 |
| Haem is crucial for medium-dependent metronidazole resistance in clinical isolates of Clostridioides difficile IM Boekhoud, I Sidorov, S Nooij, C Harmanus, IMJG Bos-Sanders, ... Journal of Antimicrobial Chemotherapy 76 (7), 1731-1740, 2021 | 48 | 2021 |
| Periodic screening of donor faeces with a quarantine period to prevent transmission of multidrug-resistant organisms during faecal microbiota transplantation: a retrospective … KEW Vendrik, EM Terveer, EJ Kuijper, S Nooij, E Boeije-Koppenol, ... The Lancet Infectious Diseases 21 (5), 711-721, 2021 | 37 | 2021 |
| Gut colonisation by extended-spectrum β-lactamase-producing Escherichia coli and its association with the gut microbiome and metabolome in Dutch adults: a matched case-control … QR Ducarmon, RD Zwittink, RPJ Willems, A Verhoeven, S Nooij, ... The Lancet Microbe 3 (6), e443-e451, 2022 | 29 | 2022 |
| Microbiota-associated risk factors for asymptomatic gut colonisation with multi-drug-resistant organisms in a Dutch nursing home QR Ducarmon, EM Terveer, S Nooij, MN Bloem, KEW Vendrik, ... Genome Medicine 13, 1-17, 2021 | 28 | 2021 |
| Fecal microbiota transplantation influences procarcinogenic Escherichia coli in recipient recurrent Clostridioides difficile patients S Nooij, QR Ducarmon, JFJ Laros, RD Zwittink, JM Norman, WK Smits, ... Gastroenterology 161 (4), 1218-1228. e5, 2021 | 28 | 2021 |
| Overview of virus metagenomic classification methods and their biological applications. Front Microbiol. 2018; 9: 749 S Nooij, D Schmitz, H Vennema, A Kroneman, MPG Koopmans | 18 | 2018 |
| Hospital transmission of borderline oxacillin-resistant Staphylococcus aureus evaluated by whole-genome sequencing MM Konstantinovski, KE Veldkamp, APM Lavrijsen, T Bosch, ... Journal of Medical Microbiology 70 (7), 001384, 2021 | 11 | 2021 |
| Long-term beneficial effect of faecal microbiota transplantation on colonisation of multidrug-resistant bacteria and resistome abundance in patients with recurrent … S Nooij, KEW Vendrik, RD Zwittink, QR Ducarmon, JJ Keller, EJ Kuijper, ... Genome Medicine 16 (1), 37, 2024 | 7 | 2024 |
| Faecal Microbiota Transplantation Engraftment After Budesonide or Placebo in Patients With Active Ulcerative Colitis Using Pre-selected Donors: A Randomized Pilot Study E van Lingen, S Nooij, EM Terveer, E Crossette, AL Prince, SK Bhattarai, ... Journal of Crohn's and Colitis, jjae043, 2024 | 6 | 2024 |
| Colibactin mutational signatures in NTHL1 tumor syndrome and MUTYH associated polyposis patients D Terlouw, A Boot, QR Ducarmon, S Nooij, MA Jessurun, ... Genes, Chromosomes and Cancer 63 (1), e23208, 2024 | 3 | 2024 |
| Dynamics of gut microbiota after fecal microbiota transplantation in ulcerative colitis: success linked to control of prevotellaceae S Pinto, D Šajbenová, E Benincà, S Nooij, EM Terveer, JJ Keller, ... Journal of Crohn's and Colitis, jjae137, 2024 | 2 | 2024 |
| Enrichment of colibactin-associated mutational signatures in unexplained colorectal polyposis patients D Terlouw, A Boot, QR Ducarmon, S Nooij, M Suerink, ME van Leerdam, ... BMC cancer 24 (1), 104, 2024 | 2 | 2024 |
| Heme is crucial for medium-dependent metronidazole resistance in clinical isolates of C. difficile IM Boekhoud, I Sidorov, S Nooij, C Harmanus, IMJG Bos-Sanders, ... bioRxiv, 2020.11. 18.388959, 2020 | 2 | 2020 |
| Evaluating donor microbiome before fecal microbiota transplantation: reply S Nooij, EM Terveer WB SAUNDERS CO-ELSEVIER INC 162 (3), 994-995, 2022 | 1 | 2022 |
| Metagenomic global survey and in-depth genomic analyses of Ruminococcus gnavus reveal differences across host lifestyle and health status S Nooij, N Plomp, IMJG Sanders, L Schout, AE van der Meulen, ... Nature Communications 16 (1), 1182, 2025 | | 2025 |
| Accessible viral metagenomics for public health and clinical domains with Jovian D Schmitz, F Zwagemaker, S Nooij, TKS Janssens, J Cremer, R Verhagen, ... Scientific Reports 14 (1), 26018, 2024 | | 2024 |
| Review of:" Escherichia coli BarA-UvrY regulates the pks island and kills Staphylococci via the genotoxin colibactin" S Nooij Qeios, 2022 | | 2022 |
| Hospital transmission of borderline oxacillin-resistant evaluated by whole-genome sequencing. MM Konstantinovski, KE Veldkamp, APM Lavrijsen, T Bosch, ... | | 2021 |
