Gene regulatory network reconstruction using Bayesian networks, the Dantzig Selector, the Lasso and their meta-analysis M Vignes, J Vandel, D Allouche, N Ramadan-Alban, C Cierco-Ayrolles, ... PloS one 6 (12), e29165, 2011 | 135 | 2011 |
The dynamics of root meristem distribution in the soil L Dupuy, M Vignes, BM McKenzie, PJ White Plant, cell & environment 33 (3), 358-369, 2010 | 45 | 2010 |
Gene clustering via integrated Markov models combining individual and pairwise features M Vignes, F Forbes IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (2), 260-270, 2008 | 35 | 2008 |
Gene regulatory networks: a primer in biological processes and statistical modelling O Angelin-Bonnet, PJ Biggs, M Vignes Gene regulatory networks: Methods and protocols, 347-383, 2019 | 23 | 2019 |
Bridging physiological and evolutionary time‐scales in a gene regulatory network G Marchand, VA Huynh‐Thu, NC Kane, S Arribat, D Varès, D Rengel, ... New Phytologist 203 (2), 685-696, 2014 | 20 | 2014 |
A multi-objective genetic algorithm to find active modules in multiplex biological networks EM Novoa-del-Toro, E Mezura-Montes, M Vignes, M Térézol, F Magdinier, ... PLoS computational biology 17 (8), e1009263, 2021 | 17 | 2021 |
Identifying health status in grazing dairy cows from milk mid-infrared spectroscopy by using machine learning methods B Contla Hernández, N Lopez-Villalobos, M Vignes Animals 11 (8), 2154, 2021 | 17 | 2021 |
A model-based approach to gene clustering with missing observation reconstruction in a Markov random field framework J Blanchet, M Vignes Journal of Computational Biology 16 (3), 475-486, 2009 | 14 | 2009 |
Exact and approximate inference in graphical models: variable elimination and beyond N Peyrard, MJ Cros, S de Givry, A Franc, S Robin, R Sabbadin, T Schiex, ... arXiv preprint arXiv:1506.08544, 2015 | 13 | 2015 |
The African swine fever modelling challenge: Model comparison and lessons learnt P Ezanno, S Picault, S Bareille, G Beaunée, GJ Boender, EA Dankwa, ... Epidemics 40, 100615, 2022 | 12 | 2022 |
Sparse regression and support recovery with L2-Boosting algorithms M Champion, C Cierco-Ayrolles, S Gadat, M Vignes Journal of Statistical Planning and Inference 155, 19-41, 2014 | 12 | 2014 |
A panel of learning methods for the reconstruction of gene regulatory networks in a systems genetics context D Allouche, C Cierco-Ayrolles, S Givry, G Guillermin, B Mangin, T Schiex, ... Gene Network Inference: Verification of Methods for Systems Genetics Data, 9-31, 2014 | 12 | 2014 |
An algorithm for the simulation of the growth of root systems on deformable domains LX Dupuy, M Vignes Journal of Theoretical Biology 310, 164-174, 2012 | 12 | 2012 |
Inferring networks from multiple samples with consensus lasso N Villa-Vialaneix, M Vignes, N Viguerie, MS Cristobal Quality technology & quantitative management 11 (1), 39-60, 2014 | 10 | 2014 |
Inferring large graphs using -penalized likelihood M Champion, V Picheny, M Vignes Statistics and Computing 28 (4), 905-921, 2018 | 9 | 2018 |
Exact or approximate inference in graphical models: why the choice is dictated by the treewidth, and how variable elimination can be exploited N Peyrard, MJ Cros, S de Givry, A Franc, S Robin, R Sabbadin, T Schiex, ... Australian & New Zealand Journal of Statistics 61 (2), 89-133, 2019 | 6 | 2019 |
Causal queries from observational data in biological systems via Bayesian networks: an empirical study in small networks A White, M Vignes Gene Regulatory Networks: Methods and Protocols, 111-142, 2019 | 5 | 2019 |
Combined expression data with missing values and gene interaction network analysis: a Markovian integrated approach J Blanchet, M Vignes 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering …, 2007 | 5 | 2007 |
Evaluation of the accuracy of the IDvet serological test for Mycoplasma bovis infection in cattle using latent class analysis of paired serum ELISA and quantitative real-time … N Marquetoux, M Vignes, A Burroughs, E Sumner, K Sawford, G Jones Plos one 18 (5), e0285598, 2023 | 4 | 2023 |
Investigating the genetic components of tuber bruising in a breeding population of tetraploid potatoes O Angelin-Bonnet, S Thomson, M Vignes, PJ Biggs, K Monaghan, ... BMC Plant Biology 23 (1), 238, 2023 | 4 | 2023 |