| Visualization and analysis of gene expression in tissue sections by spatial transcriptomics PL Ståhl, F Salmén, S Vickovic, A Lundmark, JF Navarro, J Magnusson, ... Science 353 (6294), 78-82, 2016 | 2606 | 2016 |
| High-definition spatial transcriptomics for in situ tissue profiling S Vickovic, G Eraslan, F Salmén, J Klughammer, L Stenbeck, D Schapiro, ... Nature methods 16 (10), 987-990, 2019 | 927 | 2019 |
| Spatial transcriptomics and in situ sequencing to study Alzheimer’s disease WT Chen, A Lu, K Craessaerts, B Pavie, CS Frigerio, N Corthout, X Qian, ... Cell 182 (4), 976-991. e19, 2020 | 639 | 2020 |
| Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography A Andersson, J Bergenstråhle, M Asp, L Bergenstråhle, A Jurek, ... Communications biology 3 (1), 565, 2020 | 327 | 2020 |
| Molecular atlas of the adult mouse brain C Ortiz, JF Navarro, A Jurek, A Märtin, J Lundeberg, K Meletis Science advances 6 (26), eabb3446, 2020 | 238 | 2020 |
| Barcoded solid-phase RNA capture for Spatial Transcriptomics profiling in mammalian tissue sections F Salmén, PL Ståhl, A Mollbrink, JF Navarro, S Vickovic, J Frisen, ... Nature protocols 13 (11), 2501-2534, 2018 | 180 | 2018 |
| Spatially resolved transcriptome profiling in model plant species S Giacomello, F Salmén, BK Terebieniec, S Vickovic, JF Navarro, ... Nature plants 3 (6), 1-11, 2017 | 166 | 2017 |
| Fast and accurate database searches with MS-GF+ Percolator V Granholm, S Kim, JCF Navarro, E Sjolund, RD Smith, L Kall Journal of proteome research 13 (2), 890-897, 2014 | 111 | 2014 |
| ST Pipeline: an automated pipeline for spatial mapping of unique transcripts JF Navarro, J Sjöstrand, F Salmén, J Lundeberg, PL Ståhl Bioinformatics 33 (16), 2591-2593, 2017 | 86 | 2017 |
| Identification of early neurodegenerative pathways in progressive multiple sclerosis M Kaufmann, AL Schaupp, R Sun, F Coscia, CA Dendrou, A Cortes, ... Nature Neuroscience 25 (7), 944-955, 2022 | 83 | 2022 |
| Identification and transfer of spatial transcriptomics signatures for cancer diagnosis N Yoosuf, JF Navarro, F Salmén, PL Ståhl, CO Daub Breast Cancer Research 22, 1-10, 2020 | 80 | 2020 |
| Spatial detection of fetal marker genes expressed at low level in adult human heart tissue M Asp, F Salmén, PL Ståhl, S Vickovic, U Felldin, M Löfling, ... Scientific reports 7 (1), 12941, 2017 | 70 | 2017 |
| RNF43 mutations predict response to anti-BRAF/EGFR combinatory therapies in BRAFV600E metastatic colorectal cancer E Elez, J Ros, J Fernández, G Villacampa, AB Moreno-Cárdenas, ... Nature medicine 28 (10), 2162-2170, 2022 | 66 | 2022 |
| Spatial transcriptomics reveals genes associated with dysregulated mitochondrial functions and stress signaling in Alzheimer disease JF Navarro, DL Croteau, A Jurek, Z Andrusivova, B Yang, Y Wang, ... Iscience 23 (10), 2020 | 65 | 2020 |
| An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries A Jemt, F Salmén, A Lundmark, A Mollbrink, J Fernández Navarro, ... Scientific reports 6 (1), 37137, 2016 | 60 | 2016 |
| Determining the calibration of confidence estimation procedures for unique peptides in shotgun proteomics V Granholm, JF Navarro, WS Noble, L Käll Journal of proteomics 80, 123-131, 2013 | 58 | 2013 |
| Massive and parallel expression profiling using microarrayed single-cell sequencing S Vickovic, PL Ståhl, F Salmén, S Giatrellis, JO Westholm, A Mollbrink, ... Nature communications 7 (1), 13182, 2016 | 51 | 2016 |
| ST Spot Detector: a web-based application for automatic spot and tissue detection for spatial Transcriptomics image datasets K Wong, JF Navarro, L Bergenstråhle, PL Ståhl, J Lundeberg Bioinformatics 34 (11), 1966-1968, 2018 | 36 | 2018 |
| ST viewer: a tool for analysis and visualization of spatial transcriptomics datasets J Fernández Navarro, J Lundeberg, PL Ståhl Bioinformatics 35 (6), 1058-1060, 2019 | 33 | 2019 |
| Spatial mapping of cell types by integration of transcriptomics data A Andersson, J Bergenstråhle, M Asp, L Bergenstråhle, A Jurek, ... bioRxiv, 2019.12. 13.874495, 2019 | 16 | 2019 |
