Network inference with Granger causality ensembles on single-cell transcriptomics A Deshpande, LF Chu, R Stewart, A Gitter Cell reports 38 (6), 2022 | 96 | 2022 |
From bench to bedside: Single-cell analysis for cancer immunotherapy EF Davis-Marcisak, A Deshpande, GL Stein-O’Brien, WJ Ho, D Laheru, ... Cancer cell 39 (8), 1062-1080, 2021 | 78 | 2021 |
Sparse dueling bandits K Jamieson, S Katariya, A Deshpande, R Nowak Artificial Intelligence and Statistics, 416-424, 2015 | 70 | 2015 |
Neoadjuvant cabozantinib and nivolumab convert locally advanced hepatocellular carcinoma into resectable disease with enhanced antitumor immunity WJ Ho, Q Zhu, J Durham, A Popovic, S Xavier, J Leatherman, A Mohan, ... Nature Cancer 2 (9), 891-903, 2021 | 60 | 2021 |
Spatial transcriptomics analysis of neoadjuvant cabozantinib and nivolumab in advanced hepatocellular carcinoma identifies independent mechanisms of resistance and recurrence S Zhang, L Yuan, L Danilova, G Mo, Q Zhu, A Deshpande, ATF Bell, ... Genome medicine 15 (1), 72, 2023 | 25 | 2023 |
Integrating single cell sequencing with a spatial quantitative systems pharmacology model spQSP for personalized prediction of triple-negative breast cancer immunotherapy response S Zhang, C Gong, A Ruiz-Martinez, H Wang, E Davis-Marcisak, ... Immunoinformatics 1, 100002, 2021 | 24 | 2021 |
A general framework for pairs trading with a control-theoretic point of view A Deshpande, BR Barmish 2016 IEEE Conference on Control Applications (CCA), 761-766, 2016 | 18 | 2016 |
Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces A Deshpande, M Loth, DN Sidiropoulos, S Zhang, L Yuan, ATF Bell, ... Cell systems 14 (4), 285-301. e4, 2023 | 16 | 2023 |
A substitution-by-interpolation algorithm for watermarking audio A Deshpande, KMM Prabhu Signal Processing 89 (2), 218-225, 2009 | 16 | 2009 |
PanIN and CAF transitions in pancreatic carcinogenesis revealed with spatial data integration ATF Bell, JT Mitchell, AL Kiemen, K Fujikura, H Fedor, B Gambichler, ... bioRxiv, 2022.07. 16.500312, 2022 | 15* | 2022 |
A generalization of the robust positive expectation theorem for stock trading via feedback control A Deshpande, BR Barmish 2018 European control conference (ECC), 514-520, 2018 | 15 | 2018 |
Community-wide hackathons to identify central themes in single-cell multi-omics KA Lê Cao, AJ Abadi, EF Davis-Marcisak, L Hsu, A Arora, A Coullomb, ... Genome biology 22, 1-21, 2021 | 12 | 2021 |
On simultaneous long-short stock trading controllers with cross-coupling A Deshpande, JA Gubner, BR Barmish IFAC-PapersOnLine 53 (2), 16989-16995, 2020 | 7 | 2020 |
OFDM PAR reduction by substituting original in-band subcarriers after clipping SS Gunturi, A Deshpande US Patent 8,848,813, 2014 | 7 | 2014 |
Informing virtual clinical trials of hepatocellular carcinoma with spatial multi-omics analysis of a human neoadjuvant immunotherapy clinical trial S Zhang, A Deshpande, BK Verma, H Wang, H Mi, L Yuan, WJ Ho, ... bioRxiv, 2023 | 6 | 2023 |
Digitize your Biology! Modeling multicellular systems through interpretable cell behavior JAI Johnson, GL Stein-O’Brien, M Booth, R Heiland, F Kurtoglu, ... bioRxiv, 2023 | 5 | 2023 |
Measurement error covariance in GNSS receiver circuitry, pseudoranges, reference position A Deshpande, S Ramakrishnan, S Rao US Patent 9,513,374, 2016 | 5 | 2016 |
Generating colorblind-friendly scatter plots for single-cell data T Guha, EJ Fertig, A Deshpande Elife 11, e82128, 2022 | 1 | 2022 |
Imaging mass cytometry reveals key spatial features among immune cells in hepatocellular carcinomas treated with neoadjuvant cabozantinib and nivolumab S Zhang, Q Zhu, N Gross, S Charmsaz, A Deshpande, S Xavier, A Mohan, ... Cancer Research 81 (13_Supplement), 1682-1682, 2021 | 1 | 2021 |
Self-contained dialysis system PJ Haney, BL Webb, NR Haghdoost, R Farooqui, AM Deshpande US Patent App. 13/345,297, 2012 | 1 | 2012 |