| A high-resolution map of human evolutionary constraint using 29 mammals K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ... Nature 478 (7370), 476-482, 2011 | 1254 | 2011 |
| Variation across 141,456 human exomes and genomes reveals the spectrum of loss-of-function intolerance across human protein-coding genes KJ Karczewski, LC Francioli, G Tiao, BB Cummings, J Alföldi, Q Wang, ... BioRxiv, 531210, 2019 | 1168 | 2019 |
| The genomic substrate for adaptive radiation in African cichlid fish D Brawand, CE Wagner, YI Li, M Malinsky, I Keller, S Fan, O Simakov, ... Nature 513 (7518), 375-381, 2014 | 1015 | 2014 |
| A structural variation reference for medical and population genetics RL Collins, H Brand, KJ Karczewski, X Zhao, J Alföldi, LC Francioli, ... Nature 581 (7809), 444-451, 2020 | 733 | 2020 |
| The African coelacanth genome provides insights into tetrapod evolution CT Amemiya, J Alföldi, AP Lee, S Fan, H Philippe, I MacCallum, I Braasch, ... Nature 496 (7445), 311-316, 2013 | 728 | 2013 |
| The genome of the green anole lizard and a comparative analysis with birds and mammals J Alföldi, F Di Palma, M Grabherr, C Williams, L Kong, E Mauceli, ... Nature 477 (7366), 587-591, 2011 | 694 | 2011 |
| Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators. DW Bellott, JF Hughes, H Skaletsky, LG Brown, T Pyntikova, TJ Cho, ... Nature 508, 494-499, 2014 | 633 | 2014 |
| The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons I Braasch, AR Gehrke, JJ Smith, K Kawasaki, T Manousaki, J Pasquier, ... Nature genetics 48 (4), 427-437, 2016 | 572 | 2016 |
| Convergent evolution of the genomes of marine mammals AD Foote, Y Liu, GWC Thomas, T Vinař, J Alföldi, J Deng, S Dugan, ... Nature genetics 47 (3), 272-275, 2015 | 432 | 2015 |
| Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication M Carneiro, CJ Rubin, F Di Palma, FW Albert, J Alföldi, AM Barrio, ... Science 345 (6200), 1074-1079, 2014 | 415 | 2014 |
| FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome V Wucher, F Legeai, B Hédan, G Rizk, L Lagoutte, T Leeb, V Jagannathan, ... Nucleic acids research 45 (8), e57-e57, 2017 | 380 | 2017 |
| Progressive alignment with Cactus: a multiple-genome aligner for the thousand-genome era J Armstrong, G Hickey, M Diekhans, A Deran, Q Fang, D Xie, S Feng, ... bioRxiv, 730531, 2019 | 318* | 2019 |
| Sequencing the Mouse Y Chromosome Reveals Convergent Gene Acquisition and Amplification on Both Sex Chromosomes YQS Soh, J Alföldi, T Pyntikova, LG Brown, T Graves, PJ Minx, RS Fulton, ... Cell 159 (4), 800-813, 2014 | 295 | 2014 |
| Genome-wide synteny through highly sensitive sequence alignment: Satsuma MG Grabherr, P Russell, M Meyer, E Mauceli, J Alföldi, F Di Palma, ... Bioinformatics 26 (9), 1145-1151, 2010 | 284 | 2010 |
| An Improved Canine Genome and a Comprehensive Catalogue of Coding Genes and Non-Coding Transcripts MP Hoeppner, A Lundquist, M Pirun, JRS Meadows, N Zamani, ... PloS one 9 (3), e91172, 2014 | 247 | 2014 |
| Comparative genomics as a tool to understand evolution and disease J Alföldi, K Lindblad-Toh Genome Research 23 (7), 1063-1068, 2013 | 205 | 2013 |
| Comprehensive analysis of genetic ancestry and its molecular correlates in cancer J Carrot-Zhang, N Chambwe, JS Damrauer, TA Knijnenburg, ... Cancer Cell 37 (5), 639-654. e6, 2020 | 188 | 2020 |
| A genome-wide mutational constraint map quantified from variation in 76,156 human genomes S Chen, LC Francioli, JK Goodrich, RL Collins, M Kanai, Q Wang, J Alföldi, ... bioRxiv, 2022.03. 20.485034, 2022 | 185 | 2022 |
| Transcript expression-aware annotation improves rare variant discovery and interpretation BB Cummings, KJ Karczewski, JA Kosmicki, EG Seaby, NA Watts, ... BioRxiv, 554444, 2019 | 178* | 2019 |
| A comprehensive genomic history of extinct and living elephants E Palkopoulou, M Lipson, S Mallick, S Nielsen, N Rohland, S Baleka, ... Proceedings of the National Academy of Sciences 115 (11), E2566-E2574, 2018 | 176 | 2018 |
