Dual-stream multiple instance learning network for whole slide image classification with self-supervised contrastive learning B Li, Y Li, KW Eliceiri Proceedings of the IEEE/CVF conference on computer vision and pattern …, 2021 | 516 | 2021 |
Pycro-Manager: open-source software for customized and reproducible microscope control H Pinkard, N Stuurman, IE Ivanov, NM Anthony, W Ouyang, B Li, B Yang, ... Nature methods 18 (3), 226-228, 2021 | 70 | 2021 |
Open-source deep-learning software for bioimage segmentation AM Lucas, PV Ryder, B Li, BA Cimini, KW Eliceiri, AE Carpenter Molecular Biology of the Cell 32 (9), 823-829, 2021 | 63 | 2021 |
Single image super-resolution for whole slide image using convolutional neural networks and self-supervised color normalization B Li, A Keikhosravi, AG Loeffler, KW Eliceiri Medical Image Analysis 68, 101938, 2021 | 38 | 2021 |
Non-disruptive collagen characterization in clinical histopathology using cross-modality image synthesis A Keikhosravi, B Li, Y Liu, MW Conklin, AG Loeffler, KW Eliceiri Communications biology 3 (1), 414, 2020 | 33 | 2020 |
Intensity-based registration of bright-field and second-harmonic generation images of histopathology tissue sections A Keikhosravi, B Li, Y Liu, KW Eliceiri Biomedical Optics Express 11 (1), 160-173, 2020 | 22 | 2020 |
Differentiation of pancreatic ductal adenocarcinoma and chronic pancreatitis using graph neural networks on histopathology and collagen fiber features B Li, MS Nelson, O Savari, AG Loeffler, KW Eliceiri Journal of Pathology Informatics 13, 100158, 2022 | 16 | 2022 |
Real-time polarization microscopy of fibrillar collagen in histopathology A Keikhosravi, M Shribak, MW Conklin, Y Liu, B Li, A Loeffler, ... Scientific reports 11 (1), 19063, 2021 | 16 | 2021 |
Mat: Processing in-memory acceleration for long-sequence attention M Zhou, Y Guo, W Xu, B Li, KW Eliceiri, T Rosing 2021 58th ACM/IEEE Design Automation Conference (DAC), 25-30, 2021 | 6 | 2021 |
Parallel multiphoton excited fabrication of tissue engineering scaffolds using a diffractive optical element F Atry, E Rentchler, S Alkmin, B Dai, B Li, KW Eliceiri, PJ Campagnola Optics Express 28 (3), 2744-2757, 2020 | 6 | 2020 |
Multiscale label-free imaging of fibrillar collagen in the tumor microenvironment MS Nelson, Y Liu, HM Wilson, B Li, IM Rosado-Mendez, JD Rogers, ... The Tumor Microenvironment: Methods and Protocols, 187-235, 2023 | 4 | 2023 |
Dual-stream Maximum Self-attention Multi-instance Learning B Li, KW Eliceiri arXiv preprint arXiv:2006.05538, 2020 | 4 | 2020 |
Collagen fiber centerline tracking in fibrotic tissue via deep neural networks with variational autoencoder-based synthetic training data generation H Park, B Li, Y Liu, MS Nelson, HM Wilson, E Sifakis, KW Eliceiri Medical Image Analysis 90, 102961, 2023 | 3 | 2023 |
Computationally efficient adaptive decompression for whole slide image processing Z Li, B Li, KW Eliceiri, V Narayanan Biomedical Optics Express 14 (2), 667-686, 2023 | 1 | 2023 |
Accurate subtyping of lung cancers by modelling class dependencies G Batchkala, B Li, M Fan, M McCole, C Brambilla, F Gleeson, J Rittscher IEEE, 2024 | | 2024 |
Piximi-An Images to Discovery web tool for bioimages and beyond LM Moser, N Gogoberidze, A Papaleo, A Lucas, D Dao, CA Friedrich, ... bioRxiv, 2024.06. 03.597232, 2024 | | 2024 |
Detection of crystals in joint fluid aspirates with polychromatic polarisation microscopy H Jum'ah, M Shribak, A Keikhosravi, B Li, Y Liu, D Obaidat, KW Eliceiri, ... Annals of the rheumatic diseases 82 (11), 1501-1502, 2023 | | 2023 |
Hardware-software co-design of an open-source automatic multimodal whole slide histopathology imaging system B Li, MS Nelson, JV Chacko, N Cudworth, KW Eliceiri Journal of Biomedical Optics 28 (2), 026501-026501, 2023 | | 2023 |
The Topography of Polarizable Collagen Is Significantly Different in Normal Pancreas and Pancreatic Ductal Adenocarcinoma M Chitsaz, K Eliceiri, B Lin, A Keikhosravi, A Loeffler LABORATORY INVESTIGATION 102 (SUPPL 1), 1212-1213, 2022 | | 2022 |
Retinal Image Curation Using Deep Learning N Barrett, B Li, ETA Dobson, B Blodi, KW Eliceiri, A Domalpally Investigative Ophthalmology & Visual Science 62 (8), 111-111, 2021 | | 2021 |