| Multiomics analysis reveals the impact of microbiota on host metabolism in hepatic steatosis M Zeybel, M Arif, X Li, O Altay, H Yang, M Shi, M Akyildiz, B Saglam, ... Advanced Science 9 (11), 2104373, 2022 | 46 | 2022 |
| Systematic transcriptional analysis of human cell lines for gene expression landscape and tumor representation H Jin, C Zhang, M Zwahlen, K Von Feilitzen, M Karlsson, M Shi, M Yuan, ... Nature Communications 14 (1), 5417, 2023 | 40 | 2023 |
| Discovery of therapeutic agents targeting PKLR for NAFLD using drug repositioning C Zhang, M Shi, W Kim, M Arif, M Klevstig, X Li, H Yang, C Bayram, I Bolat, ... EBioMedicine 83, 2022 | 21 | 2022 |
| A gene co-expression network-based drug repositioning approach identifies candidates for treatment of hepatocellular carcinoma M Yuan, K Shong, X Li, S Ashraf, M Shi, W Kim, J Nielsen, H Turkez, ... Cancers 14 (6), 1573, 2022 | 19 | 2022 |
| Open MoA: revealing the mechanism of action (MoA) based on network topology and hierarchy X Liao, M Ozcan, M Shi, W Kim, H Jin, X Li, H Turkez, A Achour, M Uhlén, ... Bioinformatics 39 (11), btad666, 2023 | 5 | 2023 |
| The Human Pathology Atlas for deciphering the prognostic features of human cancers M Yuan, C Zhang, K Von Feilitzen, M Zwahlen, M Shi, X Li, H Yang, ... EBioMedicine 111, 2025 | 1 | 2025 |
| Genome-wide single cell annotation of the human protein-coding genes M Karlsson, MB Álvez, M Shi, L Méar, R Schutten, F Hikmet, A Digre, ... bioRxiv, 2022.08. 03.502627, 2022 | 1 | 2022 |
| Identification of SPP1 + macrophages as an immune suppressor in hepatocellular carcinoma using single-cell and bulk transcriptomics H Jin, W Kim, M Yuan, X Li, H Yang, M Li, M Shi, H Turkez, M Uhlen, ... Frontiers in Immunology 15, 1446453, 2024 | | 2024 |
| Multi-tissue network analysis reveals the effect of JNK inhibition on dietary sucrose-induced metabolic dysfunction in rats H Yang, C Zhang, W Kim, M Shi, M Kiliclioglu, C Bayram, I Bolat, ... eLife 13, 2024 | | 2024 |
| Multi-tissue network analysis reveals the effect of JNK inhibition on dietary sucrose-induced metabolic dysfunction in rats H Yang, C Zhang, W Kim, M Shi, M Kiliclioglu, C Bayram, I Bolat, ... bioRxiv, 2024.04. 22.590583, 2024 | | 2024 |
| The Emerging Significance of PKLR in Liver Metabolism: A Comprehensive Review M Yuan, M Shi, H Yang, M Uhlén, J Boren, C Zhang, Ö Altay, ... | | 2024 |
| Multi-omics analysis reveals the influence of the oral and gut microbiome on host metabolism in non-alcoholic fatty liver disease M Zeybel, M Arif, X Li, Ö Altay, M Shi, M Akyildiz, B Saglam, M Gonenli, ... | | 2021 |
| Ckap4 is Identified as a Therapeutic Target for the Treatment of Kidney Fibrosis M Shi, P Xu, W Kim, H Jin, X Li, Y Wei, H Turkez, X Shi, A Mardinoglu, ... Available at SSRN 4524440, 0 | | |
| Genome-Wide Annotation of the Human Protein-Coding Genes Using Co-Expression Clustering M Bueno Álvez, M Karlsson, M Shi, R Tjörnhammar, L Méar, A Digre, ... | | |
