| CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content M Borry, B Cordova, A Perri, M Wibowo, TP Honap, J Ko, J Yu, K Britton, ... PeerJ 8, e9001, 2020 | 48 | 2020 |
| Shifts in gut and vaginal microbiomes are associated with cancer recurrence time in women with ovarian cancer D Jacobson, K Moore, C Gunderson, M Rowland, R Austin, TP Honap, ... PeerJ 9, e11574, 2021 | 25 | 2021 |
| Functional diversity of microbial ecologies estimated from ancient human coprolites and dental calculus DK Jacobson, TP Honap, C Monroe, J Lund, BA Houk, AC Novotny, ... Philosophical Transactions of the Royal Society B 375 (1812), 20190586, 2020 | 23 | 2020 |
| Analysis of global human gut metagenomes shows that metabolic resilience potential for short-chain fatty acid production is strongly influenced by lifestyle DK Jacobson, TP Honap, AT Ozga, N Meda, TS Kagone, H Carabin, ... Scientific reports 11 (1), 1724, 2021 | 18 | 2021 |
| Oral metagenomes from native American ancestors reveal distinct microbial lineages in the pre‐contact era TP Honap, CR Monroe, SJ Johnson, DK Jacobson, CA Abin, RM Austin, ... American Journal of Biological Anthropology 182 (4), 542-556, 2023 | 10 | 2023 |
| Evaluation of various distance computation methods for construction of haplotype-based phylogenies from large MLST datasets D Jacobson, Y Zheng, MM Plucinski, Y Qvarnstrom, JLN Barratt Molecular phylogenetics and evolution 177, 107608, 2022 | 8 | 2022 |
| CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content. PeerJ 8: e9001 M Borry, B Cordova, A Perri, M Wibowo, TP Honap, J Ko, J Yu, K Britton, ... | 8 | 2020 |
| Retrospective evaluation of an integrated molecular-epidemiological approach to cyclosporiasis outbreak investigations–United States, 2021 L Ahart, D Jacobson, M Rice, T Richins, A Peterson, Y Zheng, J Barratt, ... Epidemiology & Infection 151, e131, 2023 | 6 | 2023 |
| Untargeted fecal metabolomic analyses across an industrialization gradient reveal shared metabolites and impact of industrialization on fecal microbiome-metabolome interactions JJ Haffner, M Katemauswa, TS Kagone, E Hossain, D Jacobson, K Flores, ... MSystems 7 (6), e00710-22, 2022 | 4 | 2022 |
| The limit of detection of the BioFire® FilmArray® gastrointestinal panel for the foodborne parasite Cyclospora cayetanensis A Peterson, T Richins, K Houghton, M Mishina, S Sharma, S Sambhara, ... Diagnostic Microbiology and Infectious Disease 107 (2), 116030, 2023 | 2 | 2023 |
| Optimizing hierarchical tree dissection parameters using historic epidemiologic data as ‘ground truth’ D Jacobson, J Barratt Plos one 18 (2), e0282154, 2023 | 2 | 2023 |
| An improved framework for detecting discrete epidemiologically meaningful partitions in hierarchically clustered genetic data DK Jacobson, R Low, MM Plucinski, JLN Barratt Bioinformatics Advances 3 (1), vbad118, 2023 | 2 | 2023 |
| Characterizing the vaginal microbiome in patients with high grade cervical dysplasia (277) A Kuan-Celarier, D Jacobson, TP Honap, M Wilkerson, H Patel, K Moore, ... Gynecologic Oncology 166, S147-S148, 2022 | 2 | 2022 |
| Novel insights on the genetic population structure of human-infecting Cyclospora spp. and evidence for rapid subtype selection among isolates from the USA DK Jacobson, AC Peterson, Y Qvarnstrom, JLN Barratt Current Research in Parasitology & Vector-Borne Diseases 4, 100145, 2023 | 1 | 2023 |
| Evaluation of Prevalence and Methods of Detection of Cyclospora cayetanensis in Irrigation Water in the United States J Hofstetter, A Kahler, A Peterson, T Richins, D Jacobson, J Barratt, ... IAFP 2022, 2022 | 1 | 2022 |
| The Core Human Fecal Metabolome JJ Haffner, M Katemauswa, TS Kagone, E Hossain, D Jacobson, K Flores, ... bioRxiv, 2021.05. 08.442269, 2021 | 1 | 2021 |
| Publisher Correction: Analysis of global human gut metagenomes shows that metabolic resilience potential for short-chain fatty acid production is strongly influenced by lifestyle DK Jacobson, TP Honap, AT Ozga, N Meda, TS Kagoné, H Carabin, ... Scientific Reports 11, 2021 | 1 | 2021 |
| Sources and Prevalence of Cyclospora cayetanensis in Southeastern US Growing Environments AM Kahler, J Hofstetter, M Arrowood, A Peterson, D Jacobson, J Barratt, ... Journal of Food Protection, 100309, 2024 | | 2024 |
| Evaluation of the Increased Genetic Resolution and Utility for Source Tracking of a Recently Developed Method for Genotyping Cyclospora cayetanensis SR Leonard, MK Mammel, S Almeria, ST Gebru, DK Jacobson, ... Microorganisms 12 (5), 848, 2024 | | 2024 |
| Optimization of CDC's Cyclospora cayetanensis Genotyping Workflow Yields More Accurate Genetic Clustering Results D Jacobson, Y Zheng, A Peterson, T Richins, Y Qvarnstrom, V Cama, ... IAFP 2022, 2022 | | 2022 |
