| Current sequence-based models capture gene expression determinants in promoters but mostly ignore distal enhancers A Karollus, T Mauermeier, J Gagneur Genome biology 24 (1), 56, 2023 | 88 | 2023 |
| Predicting mean ribosome load for 5’UTR of any length using deep learning A Karollus, Ž Avsec, J Gagneur PLoS computational biology 17 (5), e1008982, 2021 | 32 | 2021 |
| Species-aware dna language models capture regulatory elements and their evolution A Karollus, J Hingerl, D Gankin, M Grosshauser, K Klemon, J Gagneur Genome Biology 25 (1), 83, 2024 | 23 | 2024 |
| The adapted Activity-By-Contact model for enhancer–gene assignment and its application to single-cell data D Hecker, F Behjati Ardakani, A Karollus, J Gagneur, MH Schulz Bioinformatics 39 (2), btad062, 2023 | 16 | 2023 |
| Germany’s regional airports under political and economic pressure E Heymann, A Karollus, L Slomka, DB AG, R Hoffmann Deutsche Bank Research, 1-15, 2015 | 10 | 2015 |
| Augmented reality S Heng, AK Hörster, A Karollus, L Slomka, DB AG, R Hoffmann Publication of the German original, 2015 | 8 | 2015 |
| Augmented reality: Bei Spezialanwendungen sollte Deutschland von dynamischem Zukunftsmarkt profitieren können S Heng, AK Hörster, A Karollus Deutsche Bank Research, Frankfurt am Main, 2015 | 8 | 2015 |
| Nucleotide dependency analysis of DNA language models reveals genomic functional elements P Tomaz da Silva, A Karollus, J Hingerl, G Galindez, N Wagner, ... bioRxiv, 2024.07. 27.605418, 2024 | 5 | 2024 |
| scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution JC Hingerl, LD Martens, A Karollus, T Manz, JD Buenrostro, FJ Theis, ... bioRxiv, 2024 | 1 | 2024 |
| Decoding sequence determinants of gene expression in diverse cellular and disease states A Lal, A Karollus, L Gunsalus, D Garfield, S Nair, AM Tseng, MG Gordon, ... bioRxiv, 2024.10. 09.617507, 2024 | 1 | 2024 |
| Viral genome sequencing to decipher in-hospital SARS-CoV-2 transmission events E Esser, EC Schulte, A Graf, A Karollus, NH Smith, T Michler, S Dvoretskii, ... Scientific Reports 14 (1), 5768, 2024 | | 2024 |
| Flashzoi: An enhanced Borzoi model for accelerated genomic analysis JC Hingerl, A Karollus, J Gagneur bioRxiv, 2024.12. 18.629121, 2024 | | 2024 |
