Uncovering large-scale conformational change in molecular dynamics without prior knowledge RL Melvin, RC Godwin, J Xiao, WG Thompson, KS Berenhaut, ... Journal of chemical theory and computation 12 (12), 6130-6146, 2016 | 57 | 2016 |
Combining capillary electrophoresis and next-generation sequencing for aptamer selection KR Riley, J Gagliano, J Xiao, K Libby, S Saito, G Yu, R Cubicciotti, ... Analytical and bioanalytical chemistry 407, 1527-1532, 2015 | 47 | 2015 |
Molecular dynamics simulations of aptamer-binding reveal generalized allostery in thrombin J Xiao, FR Salsbury Journal of Biomolecular Structure and Dynamics 35 (15), 3354-3369, 2017 | 41 | 2017 |
Mechanistic insights into thrombin's switch between “slow” and “fast” forms J Xiao, RL Melvin, FR Salsbury Physical Chemistry Chemical Physics 19 (36), 24522-24533, 2017 | 29 | 2017 |
Visualizing correlated motion with HDBSCAN clustering RL Melvin, J Xiao, RC Godwin, KS Berenhaut, FR Salsbury Jr Protein Science 27 (1), 62-75, 2018 | 22 | 2018 |
Probing light chain mutation effects on thrombin via molecular dynamics simulations and machine learning J Xiao, RL Melvin, FR Salsbury Jr Journal of Biomolecular Structure and Dynamics 37 (4), 982-999, 2019 | 20 | 2019 |
Na+-binding modes involved in thrombin's allosteric response as revealed by molecular dynamics simulations, correlation networks and Markov modeling J Xiao, FR Salsbury Physical Chemistry Chemical Physics 21 (8), 4320-4330, 2019 | 18 | 2019 |
Light Chain Mutation Effects on the Dynamics of Thrombin D Wu, J Xiao, FR Salsbury Jr Journal of Chemical Information and Modeling, 2021 | 10 | 2021 |
Evaluation of a sensitive blood test for the detection of colorectal advanced adenomas in a prospective cohort using a multiomics approach J Lin, E Ariazi, M Dzamba, TK Hsu, S Kothen-Hill, K Li, TY Liu, S Mahajan, ... J Clin Oncol 39, 43, 2021 | 8 | 2021 |
Thrombin-A Molecular Dynamics Perspective D Wu, A Prem, J Xiao, FR Salsbury Mini Reviews in Medicinal Chemistry 24 (11), 1112-1124, 2024 | 2 | 2024 |
K-mer based classifiers extract functionally relevant features to support accurate Peroxiredoxin subgroup distinction J Xiao, WH Turkett Jr bioRxiv, 387787, 2018 | 2 | 2018 |
Improving Precancerous Case Characterization via Transformer-based Ensemble Learning Y Zhong, J Xiao, T Vetterli, M Matin, E Loo, J Lin, R Bourgon, O Shapira Empirical Methods in Natural Language Processing (EMNLP), 2022, 2022 | 1 | 2022 |
What a large p for small n J Xiao JX's log, 2024 | | 2024 |
Dynamic allostery and thrombin: Insights from modeling mutants, ions and binding using molecular dynamics, statistical analysis and machine learning FR Salsbury, D Wu, J Xiao Biophysical Journal 123 (3), 62a, 2024 | | 2024 |
Toward Robust AI (2): How To Achieve Robust AI J Xiao JX's log, 2024 | | 2024 |
Toward Robust AI (1): Why Robustness Matters J Xiao JX's log, 2023 | | 2023 |
Advanced Clustering, Machine Learning And Conformational Change: New Methods And Some Applications F Salsbury, R Melvin, J Xiao Protein Science 28 (S1), 22-23, 2019 | | 2019 |
Understanding Generalized Allostery In Thrombin J Xiao Wake Forest University, 2018 | | 2018 |
Using correlated motions to determine sufficient sampling times for molecular dynamics RL Melvin, J Xiao, KS Berenhaut, RC Godwin, FR Salsbury Jr Physical Review E 98 (2), 023307, 2018 | | 2018 |
Classifying Peroxiredoxin Subgroups and Identifying Discriminating Motifs via Machine Learning J Xiao Wake Forest University, 2018 | | 2018 |