Quantifying diet-induced metabolic changes of the human gut microbiome S Shoaie, P Ghaffari, P Kovatcheva-Datchary, A Mardinoglu, P Sen, ... Cell metabolism 22 (2), 320-331, 2015 | 395 | 2015 |
Gut metabolome meets microbiome: A methodological perspective to understand the relationship between host and microbe S Lamichhane, P Sen, AM Dickens, M Orešič, HC Bertram Methods, 2018 | 169 | 2018 |
Exposure to environmental contaminants is associated with altered hepatic lipid metabolism in non-alcoholic fatty liver disease P Sen, S Qadri, PK Luukkonen, O Ragnarsdottir, A McGlinchey, S Jäntti, ... Journal of hepatology 76 (2), 283-293, 2022 | 148 | 2022 |
Evaluation and assessment of read-mapping by multiple next-generation sequencing aligners based on genome-wide characteristics S Thankaswamy-Kosalai, P Sen, I Nookaew Genomics 109 (3-4), 186–191, 2017 | 100 | 2017 |
Perspectives on systems modeling of human peripheral blood mononuclear cells P Sen, E Kemppainen, M Orešič Frontiers in molecular biosciences 4, 96, 2018 | 93 | 2018 |
Metabolic modeling of human gut microbiota on a genome scale: an overview P Sen, M Orešič Metabolites 9 (2), 22, 2019 | 88 | 2019 |
An overview of metabolomics data analysis: current tools and future perspectives S Lamichhane, P Sen, AM Dickens, T Hyötyläinen, M Orešič Comprehensive analytical chemistry 82, 387-413, 2018 | 78 | 2018 |
Deep learning meets metabolomics: a methodological perspective P Sen, S Lamichhane, VB Mathema, A McGlinchey, AM Dickens, ... Briefings in Bioinformatics 22 (2), 1531-1542, 2021 | 75 | 2021 |
Linking gut microbiome and lipid metabolism: moving beyond associations S Lamichhane, P Sen, MA Alves, HC Ribeiro, P Raunioniemi, ... Metabolites 11 (1), 55, 2021 | 74 | 2021 |
Dysregulated lipid metabolism precedes onset of psychosis AM Dickens, P Sen, MJ Kempton, N Barrantes-Vidal, C Iyegbe, ... Biological psychiatry 89 (3), 288-297, 2021 | 57 | 2021 |
Comparative systems analyses reveal molecular signatures of clinically tested vaccine adjuvants TA Olafsdottir, M Lindqvist, I Nookaew, P Andersen, J Maertzdorf, ... Scientific reports 6 (1), 39097, 2016 | 55 | 2016 |
Metabolic alterations in immune cells associate with progression to type 1 diabetes P Sen, AM Dickens, MA López-Bascón, T Lindeman, E Kemppainen, ... Diabetologia 63, 1017-1031, 2020 | 53 | 2020 |
Prenatal exposure to perfluoroalkyl substances modulates neonatal serum phospholipids, increasing risk of type 1 diabetes A McGlinchey, T Sinioja, S Lamichhane, P Sen, J Bodin, H Siljander, ... Environment International 143, 105935, 2020 | 44 | 2020 |
Prognostic model to predict postoperative acute kidney injury in patients undergoing major gastrointestinal surgery based on a national prospective observational cohort study STARSurg Collaborative, ... BJS open 2 (6), 400-410, 2018 | 43 | 2018 |
Systems biology approaches to study lipidomes in health and disease MA Alves, S Lamichhane, A Dickens, A McGlinchey, HC Ribeiro, P Sen, ... Biochimica et Biophysica Acta (BBA)-Molecular and Cell Biology of Lipids …, 2021 | 40 | 2021 |
Association of mechanical bowel preparation with oral antibiotics and anastomotic leak following left sided colorectal resection: an international, multi‐centre, prospective audit 2017 European Society of Coloproctology (ESCP) Collaborating Group, ... Colorectal Disease 20, 15-32, 2018 | 40 | 2018 |
Increased serum miR-193a-5p during non-alcoholic fatty liver disease progression: Diagnostic and mechanistic relevance K Johnson, PJ Leary, O Govaere, MJ Barter, SH Charlton, SJ Cockell, ... JHEP Reports 4 (2), 100409, 2022 | 37 | 2022 |
An international multicentre prospective audit of elective rectal cancer surgery; operative approach versus outcome, including transanal total mesorectal excision (TaTME) 2017 European Society of Coloproctology (ESCP) Collaborating Group, ... Colorectal disease 20, 33-46, 2018 | 37 | 2018 |
Persistent alterations in plasma lipid profiles before introduction of gluten in the diet associated with progression to celiac disease P Sen, C Carlsson, SM Virtanen, S Simell, H Hyöty, J Ilonen, J Toppari, ... Clinical and translational gastroenterology 10 (5), e00044, 2019 | 36 | 2019 |
Deep learning facilitates multi-data type analysis and predictive biomarker discovery in cancer precision medicine VB Mathema, P Sen, S Lamichhane, M Orešič, S Khoomrung Computational and Structural Biotechnology Journal 21, 1372-1382, 2023 | 29 | 2023 |