| LinearTurboFold: linear-time global prediction of conserved structures for RNA homologs with applications to SARS-CoV-2 S Li, H Zhang, L Zhang, K Liu, B Liu, DH Mathews, L Huang Proceedings of the National Academy of Sciences 118 (52), e2116269118, 2021 | 23 | 2021 |
| An end-to-end multi-task learning model for fact checking S Li, S Zhao, B Cheng, H Yang Proceedings of the First Workshop on Fact Extraction and VERification (FEVER …, 2018 | 18 | 2018 |
| Codonbert: Large language models for mrna design and optimization S Li, S Moayedpour, R Li, M Bailey, S Riahi, L Kogler-Anele, M Miladi, ... bioRxiv, 2023.09. 09.556981, 2023 | 13 | 2023 |
| Generation and functional analysis of defective viral genomes during SARS-CoV-2 infection T Zhou, NJ Gilliam, S Li, S Spandau, RM Osborn, S Connor, CS Anderson, ... Mbio 14 (3), e00250-23, 2023 | 11 | 2023 |
| LazySampling and LinearSampling: fast stochastic sampling of RNA secondary structure with applications to SARS-CoV-2 H Zhang, S Li, L Zhang, DH Mathews, L Huang Nucleic acids research 51 (2), e7-e7, 2023 | 6 | 2023 |
| LinearSampling: Linear-time stochastic sampling of RNA secondary structure with applications to SARS-CoV-2 H Zhang, L Zhang, S Li, D Mathews, L Huang | 5 | 2020 |
| LinearCoFold and LinearCoPartition: linear-time algorithms for secondary structure prediction of interacting RNA molecules H Zhang, S Li, N Dai, L Zhang, DH Mathews, L Huang Nucleic Acids Research 51 (18), e94-e94, 2023 | 3 | 2023 |
| Linear-time algorithms for RNA structure prediction H Zhang, L Zhang, K Liu, S Li, DH Mathews, L Huang RNA Structure Prediction, 15-34, 2022 | 3 | 2022 |
| Linearalifold: linear-time consensus structure prediction for RNA alignments A Malik, L Zhang, M Gautam, N Dai, S Li, H Zhang, DH Mathews, L Huang arXiv preprint arXiv:2206.14794, 2022 | 1 | 2022 |
| Many-Shot In-Context Learning for Molecular Inverse Design S Moayedpour, A Corrochano-Navarro, F Sahneh, S Noroozizadeh, ... arXiv preprint arXiv:2407.19089, 2024 | | 2024 |
| CodonBERT large language model for mRNA vaccines S Li, S Moayedpour, R Li, M Bailey, S Riahi, L Kogler-Anele, M Miladi, ... Genome Research 34 (7), 1027-1035, 2024 | | 2024 |
| Representations of lipid nanoparticles using large language models for transfection efficiency prediction S Moayedpour, J Broadbent, S Riahi, M Bailey, H Vu Thu, D Dobchev, ... Bioinformatics, btae342, 2024 | | 2024 |
| LinearSankoff: Linear-time Simultaneous Folding and Alignment of RNA Homologs S Li, N Dai, H Zhang, A Malik, DH Mathews, L Huang arXiv preprint arXiv:2307.09580, 2023 | | 2023 |
| Efficient Comparative Sequence Analysis Algorithms for RNA Conserved Structure and Region Detection S Li | | 2022 |
| LinearTurboFold: Fast Folding and Alignment for RNA Homologs with Applications to Coronavirus S Li, H Zhang, L Zhang, K Liu, B Liu, DH Mathews, L Huang bioRxiv, 2020.11. 23.393488, 2021 | | 2021 |
| CODONBERT: LARGE LANGUAGE MODELS FOR MRNA DESIGN S Li, S Moayedpour, R Li, M Bailey, S Riahi, M Miladi, J Miner, D Zheng, ... | | |
