Collision-geometry fluctuations and triangular flow in heavy-ion collisions B Alver, G Roland Physical Review C—Nuclear Physics 81 (5), 054905, 2010 | 1406 | 2010 |
HiGlass: web-based visual exploration and analysis of genome interaction maps P Kerpedjiev, N Abdennur, F Lekschas, C McCallum, K Dinkla, H Strobelt, ... Genome biology 19, 1-12, 2018 | 1345 | 2018 |
Triangular flow in hydrodynamics and transport theory BH Alver, C Gombeaud, M Luzum, JY Ollitrault Physical Review C—Nuclear Physics 82 (3), 034913, 2010 | 709 | 2010 |
Comparative analysis of metazoan chromatin organization JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami, KA Sohn, A Minoda, ... Nature 512 (7515), 449-452, 2014 | 419 | 2014 |
The SWI/SNF chromatin remodelling complex is required for maintenance of lineage specific enhancers BH Alver, KH Kim, P Lu, X Wang, HE Manchester, W Wang, JR Haswell, ... Nature communications 8 (1), 14648, 2017 | 369 | 2017 |
Comparative analysis of the transcriptome across distant species MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ... Nature 512 (7515), 445-448, 2014 | 334 | 2014 |
ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice R Mathur, BH Alver, AK San Roman, BG Wilson, X Wang, AT Agoston, ... Nature genetics 49 (2), 296-302, 2017 | 327 | 2017 |
SMARCB1-mediated SWI/SNF complex function is essential for enhancer regulation X Wang, RS Lee, BH Alver, JR Haswell, S Wang, J Mieczkowski, Y Drier, ... Nature genetics 49 (2), 289-295, 2017 | 322 | 2017 |
The phobos glauber monte carlo B Alver, M Baker, C Loizides, P Steinberg arXiv preprint arXiv:0805.4411, 2008 | 315 | 2008 |
MNase titration reveals differences between nucleosome occupancy and chromatin accessibility J Mieczkowski, A Cook, SK Bowman, B Mueller, BH Alver, S Kundu, ... Nature communications 7 (1), 11485, 2016 | 250 | 2016 |
Swi/Snf chromatin remodeling/tumor suppressor complex establishes nucleosome occupancy at target promoters MY Tolstorukov, CG Sansam, P Lu, EC Koellhoffer, KC Helming, BH Alver, ... Proceedings of the National Academy of Sciences 110 (25), 10165-10170, 2013 | 209 | 2013 |
Non-flow correlations and elliptic flow fluctuations in Au+ Au collisions at sqrt [s_ {NN}]= 200 GeV B Alver, BB Back, MD Baker, M Ballintijn, DS Barton, RR Betts, AA Bickley, ... Physical Review C 81 (3), 034915, 2010 | 157 | 2010 |
Event-by-Event Fluctuations of Azimuthal Particle Anisotropy in Au+ Au Collisions at sqrt [s_ {NN}]= 200 GeV B Alver, BB Back, MD Baker, M Ballintijn, DS Barton, RR Betts, AA Bickley, ... Physical review letters 104 (14), 142301, 2010 | 140 | 2010 |
Spt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast CM DeGennaro, BH Alver, S Marguerat, E Stepanova, CP Davis, J Bähler, ... Molecular and cellular biology 33 (24), 4779-4792, 2013 | 110 | 2013 |
Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming JA West, A Cook, BH Alver, M Stadtfeld, AM Deaton, K Hochedlinger, ... Nature communications 5 (1), 4719, 2014 | 104 | 2014 |
Spt5 plays vital roles in the control of sense and antisense transcription elongation A Shetty, SP Kallgren, C Demel, KC Maier, D Spatt, BH Alver, P Cramer, ... Molecular cell 66 (1), 77-88. e5, 2017 | 99 | 2017 |
The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data SB Reiff, AJ Schroeder, K Kırlı, A Cosolo, C Bakker, L Mercado, S Lee, ... Nature communications 13 (1), 2365, 2022 | 76 | 2022 |
HiNT: a computational method for detecting copy number variations and translocations from Hi-C data S Wang, S Lee, C Chu, D Jain, P Kerpedjiev, GM Nelson, JM Walsh, ... Genome biology 21, 1-15, 2020 | 69 | 2020 |
EMSAR: estimation of transcript abundance from RNA-seq data by mappability-based segmentation and reclustering S Lee, CH Seo, BH Alver, S Lee, PJ Park BMC bioinformatics 16, 1-16, 2015 | 20 | 2015 |
Pairs and Pairix: a file format and a tool for efficient storage and retrieval for Hi-C read pairs S Lee, CR Bakker, C Vitzthum, BH Alver, PJ Park Bioinformatics 38 (6), 1729-1731, 2022 | 11 | 2022 |