SignaLink 2–a signaling pathway resource with multi-layered regulatory networks D Fazekas, M Koltai, D Türei, D Módos, M Pálfy, Z Dúl, L Zsákai, ... BMC systems biology 7, 1-15, 2013 | 223 | 2013 |
Integrated intra‐and intercellular signaling knowledge for multicellular omics analysis D Türei, A Valdeolivas, L Gul, N Palacio‐Escat, M Klein, O Ivanova, ... Molecular systems biology 17 (3), e9923, 2021 | 191 | 2021 |
The NRF2-related interactome and regulome contain multifunctional proteins and fine-tuned autoregulatory loops D Papp, K Lenti, D Módos, D Fazekas, Z Dúl, D Türei, L Földvári-Nagy, ... FEBS letters 586 (13), 1795-1802, 2012 | 130 | 2012 |
SARS-CoV-2 causes a different cytokine response compared to other cytokine storm-causing respiratory viruses in severely ill patients M Olbei, I Hautefort, D Modos, A Treveil, M Poletti, L Gul, ... Frontiers in immunology 12, 629193, 2021 | 116 | 2021 |
Developments in toxicogenomics: understanding and predicting compound-induced toxicity from gene expression data B Alexander-Dann, LL Pruteanu, E Oerton, N Sharma, I Berindan-Neagoe, ... Molecular omics 14 (4), 218-236, 2018 | 114 | 2018 |
Autophagy Regulatory Network—A systems-level bioinformatics resource for studying the mechanism and regulation of autophagy D Türei, L Földvári-Nagy, D Fazekas, D Módos, J Kubisch, T Kadlecsik, ... Autophagy 11 (1), 155-165, 2015 | 97 | 2015 |
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021 | 82 | 2021 |
Cancer stem cells display extremely large evolvability: alternating plastic and rigid networks as a potential mechanism: network models, novel therapeutic target strategies … P Csermely, J Hódsági, T Korcsmáros, D Módos, ÁR Perez-Lopez, ... Seminars in cancer biology 30, 42-51, 2015 | 78 | 2015 |
The emerging role of bile acids in the pathogenesis of inflammatory bowel disease JP Thomas, D Modos, SM Rushbrook, N Powell, T Korcsmaros Frontiers in immunology 13, 829525, 2022 | 68 | 2022 |
Extracellular vesicles produced by the human commensal gut bacterium Bacteroides thetaiotaomicron affect host immune pathways in a cell‐type specific manner … L Gul, D Modos, S Fonseca, M Madgwick, JP Thomas, P Sudhakar, ... Journal of Extracellular Vesicles 11 (1), e12189, 2022 | 54 | 2022 |
NRF2‐ome: an integrated web resource to discover protein interaction and regulatory networks of NRF2 D Türei, D Papp, D Fazekas, L Földvári-Nagy, D Módos, K Lenti, ... Oxidative medicine and cellular longevity 2013 (1), 737591, 2013 | 52 | 2013 |
Adaptation and learning of molecular networks as a description of cancer development at the systems-level: Potential use in anti-cancer therapies DM Gyurkó, DV Veres, D Módos, K Lenti, T Korcsmáros, P Csermely Seminars in Cancer Biology 23 (4), 262-269, 2013 | 38 | 2013 |
Neighbours of cancer-related proteins have key influence on pathogenesis and could increase the drug target space for anticancer therapies D Módos, KC Bulusu, D Fazekas, J Kubisch, J Brooks, I Marczell, ... NPJ systems biology and applications 3 (1), 2, 2017 | 34 | 2017 |
Targets of drugs are generally and targets of drugs having side effects are specifically good spreaders of human interactome perturbations ÁR Perez-Lopez, KZ Szalay, D Türei, D Módos, K Lenti, T Korcsmáros, ... Scientific reports 5 (1), 10182, 2015 | 29 | 2015 |
Transcriptomics predicts compound synergy in drug and natural product treated glioblastoma cells LL Pruteanu, L Kopanitsa, D Módos, E Kletnieks, E Samarova, A Bender, ... PLoS One 15 (9), e0239551, 2020 | 24 | 2020 |
SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks L Csabai, D Fazekas, T Kadlecsik, M Szalay-Bekő, B Bohár, M Madgwick, ... Nucleic acids research 50 (D1), D701-D709, 2022 | 23 | 2022 |
ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways A Treveil, B Bohar, P Sudhakar, L Gul, L Csabai, M Olbei, M Poletti, ... PLOS Computational Biology 17 (2), e1008685, 2021 | 13 | 2021 |
Network biology approaches to achieve precision medicine in inflammatory bowel disease JP Thomas, D Modos, T Korcsmaros, J Brooks-Warburton Frontiers in genetics 12, 760501, 2021 | 12 | 2021 |
ADDI: Recommending alternatives for drug–drug interactions with negative health effects M Allahgholi, H Rahmani, D Javdani, G Weiss, D Módos Computers in Biology and Medicine 125, 103969, 2020 | 12 | 2020 |
A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in ulcerative colitis J Brooks-Warburton, D Modos, P Sudhakar, M Madgwick, JP Thomas, ... Nature Communications 13 (1), 2299, 2022 | 9 | 2022 |