Deep mining heterogeneous networks of biomedical linked data to predict novel drug–target associations N Zong, H Kim, V Ngo, O Harismendy Bioinformatics 33 (15), 2337-2344, 2017 | 187 | 2017 |
Finding useful data across multiple biomedical data repositories using DataMed L Ohno-Machado, SA Sansone, G Alter, I Fore, J Grethe, H Xu, ... Nature genetics 49 (6), 816-819, 2017 | 106 | 2017 |
DATS, the data tag suite to enable discoverability of datasets SA Sansone, A Gonzalez-Beltran, P Rocca-Serra, G Alter, JS Grethe, ... Scientific data 4 (1), 1-8, 2017 | 98 | 2017 |
DataMed–an open source discovery index for finding biomedical datasets X Chen, AE Gururaj, B Ozyurt, R Liu, E Soysal, T Cohen, F Tiryaki, Y Li, ... Journal of the American Medical Informatics Association 25 (3), 300-308, 2018 | 76 | 2018 |
Developing an FHIR-based computational pipeline for automatic population of case report forms for colorectal cancer clinical trials using electronic health records N Zong, A Wen, DJ Stone, DK Sharma, C Wang, Y Yu, H Liu, Q Shi, ... JCO Clinical Cancer Informatics 4, 201-209, 2020 | 35 | 2020 |
Aligning ontologies with subsumption and equivalence relations in Linked Data N Zong, S Nam, JH Eom, J Ahn, H Joe, HG Kim Knowledge-Based Systems 76, 30-41, 2015 | 29 | 2015 |
Structuralizing biomedical abstracts with discriminative linguistic features S Nam, SK Kim, HG Kim, V Ngo, N Zong Computers in biology and medicine 79, 276-285, 2016 | 25 | 2016 |
Computational drug repurposing based on electronic health records: a scoping review N Zong, A Wen, S Moon, S Fu, L Wang, Y Zhao, Y Yu, M Huang, Y Wang, ... NPJ digital medicine 5 (1), 77, 2022 | 24 | 2022 |
Drug–target prediction utilizing heterogeneous bio-linked network embeddings N Zong, RSN Wong, Y Yu, A Wen, M Huang, N Li Briefings in bioinformatics 22 (1), 568-580, 2021 | 24 | 2021 |
Developing an ETL tool for converting the PCORnet CDM into the OMOP CDM to facilitate the COVID-19 data integration Y Yu, N Zong, A Wen, S Liu, DJ Stone, D Knaack, AM Chamberlain, ... Journal of Biomedical Informatics 127, 104002, 2022 | 22 | 2022 |
Dynamic generation of concepts hierarchies for knowledge discovering in bio-medical linked data sets N Zong, DH Im, S Yang, H Namgoon, HG Kim Proceedings of the 6th International Conference on Ubiquitous Information …, 2012 | 20 | 2012 |
Recommended practices and ethical considerations for natural language processing‐assisted observational research: a scoping review S Fu, L Wang, S Moon, N Zong, H He, V Pejaver, R Relevo, A Walden, ... Clinical and translational science 16 (3), 398-411, 2023 | 17 | 2023 |
Patient portal messaging for asynchronous virtual care during the COVID-19 pandemic: retrospective analysis M Huang, A Khurana, G Mastorakos, A Wen, H He, L Wang, S Liu, ... JMIR Human Factors 9 (2), e35187, 2022 | 17 | 2022 |
Modeling cancer clinical trials using HL7 FHIR to support downstream applications: a case study with colorectal cancer data N Zong, DJ Stone, DK Sharma, A Wen, C Wang, Y Yu, M Huang, S Liu, ... International journal of medical informatics 145, 104308, 2021 | 17 | 2021 |
BETA: a comprehensive benchmark for computational drug–target prediction N Zong, N Li, A Wen, V Ngo, Y Yu, M Huang, S Chowdhury, C Jiang, S Fu, ... Briefings in bioinformatics 23 (4), bbac199, 2022 | 15 | 2022 |
Tripartite network-based repurposing method using deep learning to compute similarities for drug-target prediction N Zong, RSN Wong, V Ngo Computational Methods for Drug Repurposing, 317-328, 2019 | 15 | 2019 |
G-diff: a grouping algorithm for RDF change detection on MapReduce J Ahn, DH Im, JH Eom, N Zong, HG Kim Semantic Technology: 4th Joint International Conference, JIST 2014, Chiang …, 2015 | 14 | 2015 |
FHIR-Ontop-OMOP: Building clinical knowledge graphs in FHIR RDF with the OMOP Common data Model G Xiao, E Pfaff, E Prud'hommeaux, D Booth, DK Sharma, N Huo, Y Yu, ... Journal of biomedical informatics 134, 104201, 2022 | 12 | 2022 |
Leveraging genetic reports and electronic health records for the prediction of primary cancers: algorithm development and validation study N Zong, V Ngo, DJ Stone, A Wen, Y Zhao, Y Yu, S Liu, M Huang, C Wang, ... JMIR Medical Informatics 9 (5), e23586, 2021 | 12 | 2021 |
Clinical progress of human papillomavirus genotypes and their persistent infection in subjects with atypical squamous cells of undetermined significance cytology: Statistical … YS Kim, S Lee, N Zong, J Kahng Experimental and therapeutic medicine 13 (6), 3032-3038, 2017 | 12 | 2017 |