| Metaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes of Crohn’s remission patients despite temporal variations … JA Blakeley-Ruiz, AR Erickson, BL Cantarel, W Xiong, R Adams, ... Microbiome 7, 1-15, 2019 | 59 | 2019 |
| Considerations for constructing a protein sequence database for metaproteomics JA Blakeley-Ruiz, M Kleiner Computational and structural biotechnology journal 20, 937-952, 2022 | 41 | 2022 |
| Morphine and high-fat diet differentially alter the gut microbiota composition and metabolic function in lean versus obese mice JA Blakeley-Ruiz, CS McClintock, HK Shrestha, S Poudel, ZK Yang, ... ISME communications 2 (1), 66, 2022 | 7 | 2022 |
| Combining integrated systems-biology approaches with intervention-based experimental design provides a higher-resolution path forward for microbiome research JA Blakeley-Ruiz, CS McClintock, R Lydic, HA Baghdoyan, JJ Choo, ... Behavioral and Brain Sciences 42, 2019 | 2 | 2019 |
| Dietary protein source strongly alters gut microbiota composition and function JA Blakeley-Ruiz, A Bartlett, AS McMillan, A Awan, M Vanhoy Walsh, ... bioRxiv, 2024.04. 04.588169, 2024 | 1 | 2024 |
| Dietary protein from different sources escapes host digestion and is differentially modified by the microbiota A Awan, A Bartlett, J Blakeley-Ruiz, TG Richie, CM Theriot, M Kleiner bioRxiv, 2024.06. 26.600830, 2024 | | 2024 |
| Large Quantities of Bacterial DNA and Protein in Common Dietary Protein Source Used in Microbiome Studies A Bartlett, A Blakeley-Ruiz, T Richie, CM Theriot, M Kleiner bioRxiv, 2023.12. 07.570621, 2023 | | 2023 |
| Extracting detailed metabolic information and connections from mammalian gut microbiomes via metaproteomics JA Blakeley-Ruiz | | 2020 |
