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Hamed Khakzad
Hamed Khakzad
Tenure-Track Junior Professor, INRIA, Université de Lorraine
在 inria.fr 的电子邮件经过验证
标题
引用次数
引用次数
年份
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature methods 17 (7), 665-680, 2020
5932020
Rapid determination of quaternary protein structures in complex biological samples
S Hauri*, H Khakzad*, L Happonen, J Teleman, J Malmström, ...
Nature communications 10 (1), 1-10, 2019
552019
Spike-dependent opsonization indicates both dose-dependent inhibition of phagocytosis and that non-neutralizing antibodies can confer protection to SARS-CoV-2
W Bahnan, S Wrighton, M Sundwall, A Bläckberg, O Larsson, U Höglund, ...
Frontiers in immunology 12, 808932, 2022
542022
A quantitative Streptococcus pyogenes–human protein–protein interaction map reveals localization of opsonizing antibodies
L Happonen, S Hauri, G Svensson Birkedal, C Karlsson, T de Neergaard, ...
Nature communications 10 (1), 2727, 2019
492019
Better together: Elements of successful scientific software development in a distributed collaborative community
J Koehler Leman, BD Weitzner, PD Renfrew, SM Lewis, R Moretti, ...
PLoS computational biology 16 (5), e1007507, 2020
342020
De novo protein design by inversion of the AlphaFold structure prediction network
CA Goverde, B Wolf, H Khakzad, S Rosset, BE Correia
Protein Science 32 (6), e4653, 2023
302023
Structural determination of Streptococcus pyogenes M1 protein interactions with human immunoglobulin G using integrative structural biology
H Khakzad, L Happonen, Y Karami, S Chowdhury, GE Bergdahl, M Nilges, ...
PLoS Computational Biology 17 (1), e1008169, 2021
172021
A new age in protein design empowered by deep learning
H Khakzad, I Igashov, A Schneuing, C Goverde, M Bronstein, B Correia
Cell Systems 14 (11), 925-939, 2023
162023
A human monoclonal antibody bivalently binding two different epitopes in streptococcal M protein mediates immune function
W Bahnan, L Happonen, H Khakzad, V Kumra Ahnlide, T de Neergaard, ...
EMBO Molecular Medicine 15 (2), e16208, 2023
13*2023
Streptococcus pyogenes forms serotype-and local environment-dependent interspecies protein complexes
S Chowdhury, H Khakzad, GE Bergdahl, R Lood, S Ekstrom, D Linke, ...
Msystems 6 (5), 10.1128/msystems. 00271-21, 2021
122021
Structural proteomics, electron cryo-microscopy and structural modeling approaches in bacteria–human protein interactions
S Chowdhury, L Happonen, H Khakzad, L Malmström, J Malmström
Medical microbiology and immunology 209 (3), 265-275, 2020
122020
Protein structure prediction using bio-inspired algorithm: A review
Y Karami, H Khakzad, H Shirazi, S Arab
The 16th CSI international symposium on artificial intelligence and signal …, 2012
102012
In vivo cross-linking MS of the complement system MAC assembled on live Gram-positive bacteria
H Khakzad, L Happonen, G Tran Van Nhieu, J Malmström, L Malmström
Frontiers in Genetics 11, 612475, 2021
92021
PDB2Graph: A toolbox for identifying critical amino acids map in proteins based on graph theory
N Niknam, H Khakzad, SS Arab, H Naderi-Manesh
Computers in biology and medicine 72, 151-159, 2016
92016
Shigella IpaA mediates actin bundling through diffusible vinculin oligomers with activation imprint
C Valencia-Gallardo, DI Aguilar-Salvador, H Khakzad, B Cocom-Chan, ...
Cell Reports 42 (4), 2023
8*2023
Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics
C Gueto-Tettay, D Tang, L Happonen, M Heusel, H Khakzad, ...
PLoS Computational Biology 19 (1), e1010457, 2023
62023
The structure of human dermatan sulfate epimerase 1 emphasizes the importance of C5-epimerization of glucuronic acid in higher organisms
M Hasan*, H Khakzad*, L Happonen, A Sundin, J Unge, U Mueller, ...
Chemical science 12 (5), 1869-1885, 2021
62021
Accelerating protein structure prediction using particle swarm optimization on GPU
H Khakzad, Y Karami, SS Arab
Biorxiv, 022434, 2015
62015
Invasive streptococcal infection can lead to the generation of cross-strain opsonic antibodies
T de Neergaard, A Bläckberg, H Ivarsson, S Thomasson, ...
Microbiology spectrum 10 (6), e02486-22, 2022
32022
Greedy de novo motif discovery to construct motif repositories for bacterial proteomes
H Khakzad, J Malmström, L Malmström
BMC bioinformatics 20, 1-10, 2019
32019
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