| In silico methods and tools for drug discovery B Shaker, S Ahmad, J Lee, C Jung, D Na Computers in biology and medicine 137, 104851, 2021 | 273 | 2021 |
| LightBBB: computational prediction model of blood–brain-barrier penetration based on LightGBM B Shaker, MS Yu, JS Song, S Ahn, JY Ryu, KS Oh, D Na Bioinformatics 37 (8), 1135-1139, 2021 | 106 | 2021 |
| User guide for the discovery of potential drugs via protein structure prediction and ligand docking simulation B Shaker, MS Yu, J Lee, Y Lee, C Jung, D Na journal of microbiology 58, 235-244, 2020 | 38 | 2020 |
| An integrative reverse vaccinology, immunoinformatic, docking and simulation approaches towards designing of multi-epitopes based vaccine against monkeypox virus A Ullah, FA Shahid, MU Haq, M Tahir ul Qamar, M Irfan, B Shaker, ... Journal of Biomolecular Structure and Dynamics 41 (16), 7821-7834, 2023 | 32 | 2023 |
| Vaccinomics to Design a Multi-Epitopes Vaccine for Acinetobacter baumannii M Ud-Din, A Albutti, A Ullah, S Ismail, S Ahmad, A Naz, M Khurram, ... International Journal of Environmental Research and Public Health 19 (9), 5568, 2022 | 32 | 2022 |
| Rational Drug Design for Pseudomonas aeruginosa PqsA Enzyme: An in silico Guided Study to Block Biofilm Formation B Shaker, S Ahmad, TD Thai, S Eyun, D Na Frontiers in molecular biosciences 7, 577316, 2020 | 25 | 2020 |
| Design of a Multi-Epitope Vaccine against Tropheryma whipplei Using Immunoinformatics and Molecular Dynamics Simulation Techniques TH Albekairi, A Alshammari, M Alharbi, AF Alshammary, M Tahir ul Qamar, ... Vaccines 10 (5), 691, 2022 | 20 | 2022 |
| Gas-mediated cancer therapy combined with starvation therapy, ultrasound therapy, chemotherapy, radiotherapy, and photodynamic therapy: a review SB Thakar, PN Ghorpade, B Shaker, J Lee, D Na Environmental Chemistry Letters 19, 2981-2993, 2021 | 15 | 2021 |
| Whole proteome-based therapeutic targets annotation and designing of multi-epitope-based vaccines against the gram-negative XDR-Alcaligenes faecalis bacterium M Alharbi, A Alshammari, AF Alasmari, S Alharbi, M Tahir ul Qamar, ... Vaccines 10 (3), 462, 2022 | 13 | 2022 |
| Introduction of advanced methods for structure-based drug discovery B Shaker, KM Tran, C Jung, D Na Current Bioinformatics 16 (3), 351-363, 2021 | 12 | 2021 |
| Computational design of a multi-epitope vaccine against Porphyromonas gingivalis B Shaker, S Ahmad, J Shen, HW Kim, D Na Frontiers in Immunology 13, 806825, 2022 | 11 | 2022 |
| Towards a novel peptide vaccine for Middle East respiratory syndrome coronavirus and its possible use against pandemic COVID-19 S Khan, B Shaker, S Ahmad, SW Abbasi, M Arshad, A Haleem, S Ismail, ... Journal of molecular liquids 324, 114706, 2021 | 10 | 2021 |
| A machine learning-based quantitative model (LogBB_Pred) to predict the blood–brain barrier permeability (logBB value) of drug compounds B Shaker, J Lee, Y Lee, MS Yu, HM Lee, E Lee, HC Kang, KS Oh, HW Kim, ... Bioinformatics 39 (10), btad577, 2023 | 8 | 2023 |
| Moleculer dynamics simulaiton revealed reciever domain of Acinetobacter baumannii BfmR enzyme as the hot spot for future antibiotics designing S Ahmad, B Shaker, F Ahmad, S Raza, SS Azam Journal of Biomolecular Structure and Dynamics 37 (11), 2897-2912, 2019 | 6 | 2019 |
| Virtual Screening of Artemisia annua Phytochemicals as Potential Inhibitors of SARS-CoV-2 Main Protease Enzyme K Miandad, A Ullah, K Bashir, S Khan, SA Abideen, B Shaker, M Alharbi, ... Molecules 27 (22), 8103, 2022 | 3 | 2022 |
| Genotypes and phenotypes of DNM1 encephalopathy J Kim, LY Teng, B Shaker, D Na, HY Koh, SS Kwon, JS Lee, HD Kim, ... Journal of medical genetics 60 (11), 1076-1083, 2023 | 2 | 2023 |
| Identification of Novel Genes and Pathways of Ovarian Cancer Using a Comprehensive Bioinformatic Framework H Rashid, A Ullah, S Ahmad, SM Aljahdali, Y Waheed, B Shaker, ... Applied Biochemistry and Biotechnology, 1-20, 2023 | 1 | 2023 |
| An Optimized Deep Learning Approach for Blood-Brain Barrier Permeability Prediction with ODE Integration N Aftab, F Masood, S Ahmad, SS Rahim, S Sanami, B Shaker, DQ Wei Informatics in Medicine Unlocked, 101526, 2024 | | 2024 |
| A multi‐layered network model identifies Akt1 as a common modulator of neurodegeneration D Na, DH Lim, JS Hong, HM Lee, D Cho, MS Yu, B Shaker, J Ren, B Lee, ... Molecular Systems Biology 19 (12), e11801, 2023 | | 2023 |
| Vaccinomics to Design a Multi-Epitopes Vaccine for Acinetobacter baumannii A Albutti, A Ullah, S Ismail, S Ahmad, A Naz, M Khurram, M ul Haq, ... IJERPH 19 (9), 1-26, 2022 | | 2022 |
