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Yaoyi Chen
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Coarse graining molecular dynamics with graph neural networks
BE Husic, NE Charron, D Lemm, J Wang, A Pérez, M Majewski, A Krämer, ...
The Journal of chemical physics 153 (19), 2020
1552020
Flow-matching: Efficient coarse-graining of molecular dynamics without forces
J Kohler, Y Chen, A Kramer, C Clementi, F Noé
Journal of Chemical Theory and Computation 19 (3), 942-952, 2023
552023
Machine learning implicit solvation for molecular dynamics
Y Chen, A Krämer, NE Charron, BE Husic, C Clementi, F Noé
The Journal of Chemical Physics 155 (8), 2021
512021
Machine learned coarse-grained protein force-fields: Are we there yet?
AEP Durumeric, NE Charron, C Templeton, F Musil, K Bonneau, ...
Current opinion in structural biology 79, 102533, 2023
412023
Posttranscriptional site-directed spin labeling of large RNAs with an unnatural base pair system under non-denaturing conditions
Y Wang, V Kathiresan, Y Chen, Y Hu, W Jiang, G Bai, G Liu, PZ Qin, ...
Chemical science 11 (35), 9655-9664, 2020
182020
Statistically optimal force aggregation for coarse-graining molecular dynamics
A Krämer, AEP Durumeric, NE Charron, Y Chen, C Clementi, F Noé
The Journal of Physical Chemistry Letters 14 (17), 3970-3979, 2023
172023
Site-specific covalent labeling of large RNAs with nanoparticles empowered by expanded genetic alphabet transcription
Y Wang, Y Chen, Y Hu, X Fang
Proceedings of the National Academy of Sciences 117 (37), 22823-22832, 2020
162020
Navigating protein landscapes with a machine-learned transferable coarse-grained model
NE Charron, F Musil, A Guljas, Y Chen, K Bonneau, AS Pasos-Trejo, ...
arXiv preprint arXiv:2310.18278, 2023
52023
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