A single-cell transcriptomic atlas characterizes ageing tissues in the mouse Nature 583 (7817), 590-595, 2020 | 862 | 2020 |
Ageing hallmarks exhibit organ-specific temporal signatures N Schaum, B Lehallier, O Hahn, R Pálovics, S Hosseinzadeh, SE Lee, ... Nature 583 (7817), 596-602, 2020 | 436 | 2020 |
Activation of lysosomal function in the course of autophagy via mTORC1 suppression and autophagosome-lysosome fusion J Zhou, SH Tan, V Nicolas, C Bauvy, ND Yang, J Zhang, Y Xue, ... Cell research 23 (4), 508-523, 2013 | 435 | 2013 |
Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris Tabula Muris Consortium, ... Nature 562 (7727), 367-372, 2018 | 196* | 2018 |
Self-assembling manifolds in single-cell RNA sequencing data AJ Tarashansky, Y Xue, P Li, SR Quake, B Wang Elife 8, e48994, 2019 | 66 | 2019 |
A single-parasite transcriptional atlas of Toxoplasma Gondii reveals novel control of antigen expression Y Xue, TC Theisen, S Rastogi, A Ferrel, SR Quake, JC Boothroyd Elife 9, e54129, 2020 | 61 | 2020 |
Single-cell analysis of Schistosoma mansoni identifies a conserved genetic program controlling germline stem cell fate P Li, D Nanes Sarfati, Y Xue, X Yu, AJ Tarashansky, SR Quake, B Wang Nature communications 12 (1), 485, 2021 | 44 | 2021 |
Differential Impacts on Host Transcription by ROP and GRA Effectors from the Intracellular Parasite Toxoplasma gondii S Rastogi, Y Xue, SR Quake, JC Boothroyd mBio 11 (3), 2020 | 29 | 2020 |
The murine transcriptome reveals global aging nodes with organ-specific phase and amplitude N Schaum, B Lehallier, O Hahn, S Hosseinzadeh, SE Lee, R Sit, DP Lee, ... Biorxiv, 662254, 2019 | 19 | 2019 |
Heterologous reporter expression in the planarian Schmidtea mediterranea through somatic mRNA transfection RN Hall, U Weill, L Drees, S Leal-Ortiz, H Li, M Khariton, C Chai, Y Xue, ... Cell Reports Methods 2 (10), 2022 | 17 | 2022 |
The RpoE stress response pathway mediates reduction of the virulence of enteropathogenic Escherichia coli by zinc Y Xue, J Osborn, A Panchal, JL Mellies Applied and Environmental Microbiology 81 (11), 3766-3774, 2015 | 17 | 2015 |
Temperature effect on polymerase fidelity Y Xue, I Braslavsky, SR Quake Journal of Biological Chemistry 297 (5), 2021 | 11 | 2021 |
Single-cell profiling identifies ACE+ granuloma macrophages as a nonpermissive niche for intracellular bacteria during persistent Salmonella infection THM Pham, Y Xue, SM Brewer, KE Bernstein, SR Quake, DM Monack Science Advances 9 (1), eadd4333, 2023 | 9 | 2023 |
Differential impacts on host transcription by ROP and GRA effectors from the intracellular parasite Toxoplasma gondii. mBio 11: e00182-20 S Rastogi, Y Xue, SR Quake, JC Boothroyd | 4 | 2020 |
Single-cell analysis of Schistosoma mansoni reveals a conserved genetic program controlling germline stem cell fate P Li, DN Sarfati, Y Xue, X Yu, AJ Tarashansky, SR Quake, B Wang bioRxiv, 2020.07. 06.190033, 2020 | 2 | 2020 |
Coordinated wound responses in a regenerative animal-algal holobiont D Nanes Sarfati, Y Xue, ES Song, A Byrne, D Le, S Darmanis, SR Quake, ... Nature Communications 15 (1), 4032, 2024 | 1 | 2024 |
69MO 5-Hydroxymethycytosine analysis reveals stable epigenetic changes in tumor tissue that enable cfDNA cancer predictions F Feng, Y Ning, Y Xue, V Friedl, D Hann, B Gibb, A Bergamaschi, G Guler, ... Annals of Oncology 33, S573, 2022 | 1 | 2022 |
A single-parasite transcriptional landscape of asexual development in Toxoplasma gondii Y Xue, TT Theisen, S Rastogi, A Ferrel, SR Quake, JC Boothroyd bioRxiv, 2019 | 1 | 2019 |
Analytical Validation of an Early Detection Pancreatic Cancer Test Using 5-Hydroxymethylation Signatures S Chowdhury, M Kesling, M Collins, V Lopez, Y Xue, G Oliveira, V Friedl, ... The Journal of Molecular Diagnostics 26 (10), 888-896, 2024 | | 2024 |
Coordinated wound responses in a regenerative animal-algal photosymbiotic metaorganism D Nanes Sarfati, Y Xue, ES Song, A Byrne, S Darmanis, SR Quake, ... | | 2023 |