| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 16897 | 2012 |
| Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors J Wang, J Zhuang, S Iyer, XY Lin, TW Whitfield, MC Greven, BG Pierce, ... Genome research 22 (9), 1798-1812, 2012 | 1064 | 2012 |
| Factorbook. org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium J Wang, J Zhuang, S Iyer, XY Lin, MC Greven, BH Kim, J Moore, ... Nucleic acids research 41 (D1), D171-D176, 2012 | 438 | 2012 |
| TEMP: a computational method for analyzing transposable element polymorphism in populations J Zhuang, J Wang, W Theurkauf, Z Weng Nucleic acids research 42 (11), 6826-6838, 2014 | 135 | 2014 |
| PGBD5 promotes site-specific oncogenic mutations in human tumors AG Henssen, R Koche, J Zhuang, E Jiang, C Reed, A Eisenberg, E Still, ... Nature genetics 49 (7), 1005-1014, 2017 | 93 | 2017 |
| An integrated encyclopedia of DNA elements in the human genome. vol. 489 I Dunham, A Kundaje, SF Aldred, PJ Collins, CA Davis, F Doyle, ... Nature, 57-74, 2012 | 59 | 2012 |
| Non-invasive characterization of human bone marrow stimulation and reconstitution by cell-free messenger RNA sequencing A Ibarra, J Zhuang, Y Zhao, NS Salathia, V Huang, AD Acosta, J Aballi, ... Nature communications 11 (1), 400, 2020 | 56 | 2020 |
| Noninvasive characterization of Alzheimer’s disease by circulating, cell-free messenger RNA next-generation sequencing S Toden, J Zhuang, AD Acosta, AP Karns, NS Salathia, JB Brewer, ... Science advances 6 (50), eabb1654, 2020 | 52 | 2020 |
| Local sequence assembly reveals a high-resolution profile of somatic structural variations in 97 cancer genomes J Zhuang, Z Weng Nucleic acids research 43 (17), 8146-8156, 2015 | 25 | 2015 |
| TGF‐β1 enhances Kv2. 1 potassium channel protein expression and promotes maturation of cerebellar granule neurons JL Zhuang, CY Wang, MH Zhou, KZ Duan, YA Mei Journal of cellular physiology 227 (1), 297-307, 2012 | 24 | 2012 |
| Noninvasive stratification of nonalcoholic fatty liver disease by whole transcriptome cell-free mRNA characterization N Chalasani, S Toden, JJ Sninsky, RP Rava, JV Braun, S Gawrieh, ... American Journal of Physiology-Gastrointestinal and Liver Physiology 320 (4 …, 2021 | 21 | 2021 |
| Forward genetic screen of human transposase genomic rearrangements AG Henssen, E Jiang, J Zhuang, L Pinello, ND Socci, R Koche, M Gonen, ... BMC genomics 17, 1-9, 2016 | 15 | 2016 |
| Survey of extracellular communication of systemic and organ-specific inflammatory responses through cell free messenger RNA profiling in mice J Zhuang, A Ibarra, A Acosta, AP Karns, J Aballi, M Nerenberg, JJ Sninsky, ... EBioMedicine 83, 2022 | 7 | 2022 |
| Genome-wide mapping of the binding sites of 119 human transcription factors J Wang, J Zhuang, S Iyer, X Lin, T Whitfield, M Greven, SF Aldred, ... Submitted, NCP010, 2011 | 4 | 2011 |
| Circulating cell-free messenger RNA secretome characterization of primary sclerosing cholangitis N Chalasani, R Vuppalanchi, C Lammert, S Gawrieh, JV Braun, J Zhuang, ... Hepatology Communications 7 (6), e0140, 2023 | 2 | 2023 |
| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Overall coordination (data analysis coordination ... Nature 489 (7414), 57-74, 2012 | 2 | 2012 |
| Cell-free rna library preparations N Salathia, M Nerenberg, A Ibarra, J Zhuang US Patent App. 17/243,452, 2022 | 1 | 2022 |
| Factorbook Motif Pipeline: A de novo motif discovery and filtering web server for ChIP-seq peaks BH Kim, J Zhuang, J Wang, Z Weng bioRxiv, 033670, 2015 | 1 | 2015 |
| Systems and methods of detecting a risk of alzheimer's disease using a circulating-free mrna profiling assay M Nerenberg, A Ibarra, J Zhuang, A Acosta US Patent App. 17/932,244, 2023 | | 2023 |
| Transcriptome profiling of cerebrospinal fluid in Alzheimer's Disease reveals molecular dysregulations associated with disease RE De Sota, SJ Khoury, J Zhuang, RA Rissman, JB Brewer, SR Quake, ... medRxiv, 2023.11. 21.23298852, 2023 | | 2023 |
