| Measuring quantitative effects of methylation on transcription factor–DNA binding affinity Z Zuo, B Roy, YK Chang, D Granas, GD Stormo Science advances 3 (11), eaao1799, 2017 | 78 | 2017 |
| Correlation of genomic and physiological traits of Thermoanaerobacter species with biofuel yields CL Hemme, MW Fields, Q He, Y Deng, L Lin, Q Tu, H Mouttaki, A Zhou, ... Applied and Environmental Microbiology 77 (22), 7998-8008, 2011 | 54 | 2011 |
| High-resolution specificity from DNA sequencing highlights alternative modes of Lac repressor binding Z Zuo, GD Stormo Genetics 198 (3), 1329-1343, 2014 | 47 | 2014 |
| Response element composition governs correlations between binding site affinity and transcription in glucocorticoid receptor feed-forward loops SK Sasse, Z Zuo, V Kadiyala, L Zhang, MA Pufall, MK Jain, TL Phang, ... Journal of Biological Chemistry 290 (32), 19756-19769, 2015 | 43 | 2015 |
| Spec-seq: determining protein–DNA-binding specificity by sequencing Z Zuo, YK Chang, GD Stormo Briefings in functional genomics 14 (1), 30-38, 2015 | 43 | 2015 |
| A modified bacterial one-hybrid system yields improved quantitative models of transcription factor specificity RG Christensen, A Gupta, Z Zuo, LA Schriefer, SA Wolfe, GD Stormo Nucleic acids research 39 (12), e83-e83, 2011 | 34 | 2011 |
| Quantitative profiling of selective Sox/POU pairing on hundreds of sequences in parallel by Coop-seq YK Chang, Y Srivastava, C Hu, A Joyce, X Yang, Z Zuo, JJ Havranek, ... Nucleic acids research 45 (2), 832-845, 2017 | 33 | 2017 |
| A quantitative understanding of lac repressor’s binding specificity and flexibility Z Zuo, Y Chang, GD Stormo Quantitative Biology 3, 69-80, 2015 | 16 | 2015 |
| On the dependent recognition of some long zinc finger proteins Z Zuo, T Billings, M Walker, PM Petkov, PM Fordyce, GD Stormo Nucleic Acids Research 51 (11), 5364-5376, 2023 | 15* | 2023 |
| Quantitative profiling of BATF family proteins/JUNB/IRF hetero-trimers using Spec-seq YK Chang, Z Zuo, GD Stormo BMC Molecular Biology 19, 1-9, 2018 | 15 | 2018 |
| Quantitative specificity of STAT1 and several variants B Roy, Z Zuo, GD Stormo Nucleic acids research 45 (14), 8199-8207, 2017 | 12 | 2017 |
| Encoding, regression, and classification of transcription factors’ Specificity and methylation effects Z Zuo OBM Genetics 5 (3), 1-1, 2021 | 3 | 2021 |
| The successive emergence of ERVL-MaLRs in primates Z Zuo Virus Evolution 9 (2), vead072, 2023 | 2 | 2023 |
| THE1B may have no role in human pregnancy due to ZNF430-mediated silencing Z Zuo Mobile DNA 14 (1), 6, 2023 | 2 | 2023 |
| Quantifying the arms race between LINE-1 and KRAB-zinc finger genes through TECookbook Z Zuo NAR Genomics and Bioinformatics 5 (3), lqad078, 2023 | 1 | 2023 |
| From motif to function: Inferring the functions of long zinc finger proteins through combinatorial selection Z Zuo bioRxiv, 2022.04. 19.488842, 2022 | | 2022 |
