| A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014 | 1952 | 2014 |
| MissMech: An R package for testing homoscedasticity, multivariate normality, and missing completely at random (MCAR) M Jamshidian, SJ Jalal, C Jansen Journal of Statistical software 56 (6), 1-31, 2014 | 282 | 2014 |
| Systematic phenotyping and characterization of the 5xFAD mouse model of Alzheimer’s disease S Forner, S Kawauchi, G Balderrama-Gutierrez, EA Kramár, DP Matheos, ... Scientific data 8 (1), 270, 2021 | 203 | 2021 |
| Occupancy maps of 208 chromatin-associated proteins in one human cell type EC Partridge, SB Chhetri, JW Prokop, RC Ramaker, CS Jansen, ST Goh, ... Nature 583 (7818), 720-728, 2020 | 103 | 2020 |
| Bcl11b and combinatorial resolution of cell fate in the T-cell gene regulatory network WJR Longabaugh, W Zeng, JA Zhang, H Hosokawa, CS Jansen, L Li, ... Proceedings of the National Academy of Sciences 114 (23), 5800-5807, 2017 | 86 | 2017 |
| Building gene regulatory networks from scATAC-seq and scRNA-seq using linked self organizing maps C Jansen, RN Ramirez, NC El-Ali, D Gomez-Cabrero, J Tegner, ... PLoS computational biology 15 (11), e1006555, 2019 | 74 | 2019 |
| Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps A Mortazavi, S Pepke, C Jansen, GK Marinov, J Ernst, M Kellis, ... Genome research 23 (12), 2136-2148, 2013 | 51 | 2013 |
| Perspectives on ENCODE F Abascal, R Acosta, NJ Addleman, J Adrian, V Afzal, B Aken, JA Akiyama Nature 583 (7818), 693-699, 2020 | 26 | 2020 |
| Uncovering the mesendoderm gene regulatory network through multi-omic data integration C Jansen, KD Paraiso, JJ Zhou, IL Blitz, MB Fish, RM Charney, JS Cho, ... Cell reports 38 (7), 2022 | 16 | 2022 |
| Uncovering the gene regulatory networks underlying macrophage polarization through comparative analysis of bulk and single-cell data K Carvalho, E Rebboah, C Jansen, K Williams, A Dowey, C McGill, ... bioRxiv, 2021.01. 20.427499, 2021 | 7 | 2021 |
| Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes G Xiang, X He, BM Giardine, KJ Isaac, DJ Taylor, RC McCoy, C Jansen, ... Genome Research 34 (7), 1089-1105, 2024 | 2 | 2024 |
| Building Gene Regulatory Networks Using Self-Organizing Maps C Jansen University of California, Irvine, 2019 | 1 | 2019 |
| Systematic Integration of Epigenomic Landscapes in Human and Mouse Blood Cells to Predict Activity and Targets of Regulatory Elements RC Hardison, G Xiang, C Jansen, CA Keller, BM Giardine, A Cockburn, ... The FASEB Journal 36, 2022 | | 2022 |
| Perspectives on ENCODE NJ Addleman, J Adrian, UK Baymuradov, A Bhaskar, N Boley, L Cao, ... Nature 583 (7818), 693-698, 2020 | | 2020 |
| Progressive Clustering and Characterization of Increasingly Higher Dimensional Datasets with Living Self-organizing Maps C Jansen, A Mortazavi Advances in Self-Organizing Maps, Learning Vector Quantization, Clustering …, 2020 | | 2020 |
| MissMech: An R Package for Testing Homoscedasticity, Multivariate Normality, and Missing M Jamshidian, SJ Jalal, C Jansen Issue: Journal of Statistical Software, 56 (6), 2014 | | 2014 |
| Systematic phenotyping and characterization of the 5xFAD mouse model of Alzheimer’s S Forner, S Kawauchi, G Balderrama-Gutierrez, EA Kramár, DP Matheos, ... | | |
| Integrating and mining the chromatin landscape of cell-type A Mortazavi, S Pepke, C Jansen | | |
