Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10 MA Suchard, P Lemey, G Baele, DL Ayres, AJ Drummond, A Rambaut Virus evolution 4 (1), vey016, 2018 | 2948 | 2018 |
RDP3: a flexible and fast computer program for analyzing recombination DP Martin, P Lemey, M Lott, V Moulton, D Posada, P Lefeuvre Bioinformatics 26 (19), 2462-2463, 2010 | 1834 | 2010 |
Bayesian phylogeography finds its roots P Lemey, A Rambaut, AJ Drummond, MA Suchard PLoS computational biology 5 (9), e1000520, 2009 | 1805 | 2009 |
Genomics and epidemiology of the P. 1 SARS-CoV-2 lineage in Manaus, Brazil NR Faria, TA Mellan, C Whittaker, IM Claro, DS Candido, S Mishra, ... Science 372 (6544), 815-821, 2021 | 1580 | 2021 |
Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty G Baele, P Lemey, T Bedford, A Rambaut, MA Suchard, AV Alekseyenko Molecular biology and evolution 29 (9), 2157-2167, 2012 | 1135 | 2012 |
Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic MF Boni, P Lemey, X Jiang, TTY Lam, BW Perry, TA Castoe, A Rambaut, ... Nature microbiology 5 (11), 1408-1417, 2020 | 1050 | 2020 |
The early spread and epidemic ignition of HIV-1 in human populations NR Faria, A Rambaut, MA Suchard, G Baele, T Bedford, MJ Ward, ... science 346 (6205), 56-61, 2014 | 987 | 2014 |
Mapping the origins and expansion of the Indo-European language family R Bouckaert, P Lemey, M Dunn, SJ Greenhill, AV Alekseyenko, ... Science 337 (6097), 957-960, 2012 | 808 | 2012 |
Phylogeography takes a relaxed random walk in continuous space and time P Lemey, A Rambaut, JJ Welch, MA Suchard Molecular biology and evolution 27 (8), 1877-1885, 2010 | 732 | 2010 |
Assessing substitution saturation with DAMBE X Xia, P Lemey The phylogenetic handbook: a practical approach to DNA and protein phylogeny …, 2009 | 704 | 2009 |
Complete genomic sequence of human coronavirus OC43: molecular clock analysis suggests a relatively recent zoonotic coronavirus transmission event L Vijgen, E Keyaerts, E Moës, I Thoelen, E Wollants, P Lemey, ... Journal of virology 79 (3), 1595-1604, 2005 | 675 | 2005 |
Evolution and epidemic spread of SARS-CoV-2 in Brazil DS Candido, IM Claro, JG De Jesus, WM Souza, FRR Moreira, ... Science 369 (6508), 1255-1260, 2020 | 665 | 2020 |
The phylogenetic handbook: a practical approach to phylogenetic analysis and hypothesis testing P Lemey, M Salemi, AM Vandamme Cambridge University Press, 2009 | 629 | 2009 |
Tracing the origin and history of the HIV-2 epidemic P Lemey, OG Pybus, B Wang, NK Saksena, M Salemi, AM Vandamme Proceedings of the National Academy of Sciences 100 (11), 6588-6592, 2003 | 625 | 2003 |
Accurate model selection of relaxed molecular clocks in Bayesian phylogenetics G Baele, WLS Li, AJ Drummond, MA Suchard, P Lemey Molecular biology and evolution 30 (2), 239-243, 2012 | 621 | 2012 |
SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics F Bielejec, A Rambaut, MA Suchard, P Lemey Bioinformatics 27 (20), 2910-2912, 2011 | 550 | 2011 |
Global circulation patterns of seasonal influenza viruses vary with antigenic drift T Bedford, S Riley, IG Barr, S Broor, M Chadha, NJ Cox, RS Daniels, ... Nature 523 (7559), 217-220, 2015 | 542 | 2015 |
Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci MS Gill, P Lemey, NR Faria, A Rambaut, B Shapiro, MA Suchard Molecular biology and evolution 30 (3), 713-724, 2013 | 522 | 2013 |
Virus genomes reveal factors that spread and sustained the Ebola epidemic G Dudas, LM Carvalho, T Bedford, AJ Tatem, G Baele, NR Faria, DJ Park, ... Nature 544 (7650), 309-315, 2017 | 445 | 2017 |
SpreaD3: interactive visualization of spatiotemporal history and trait evolutionary processes F Bielejec, G Baele, B Vrancken, MA Suchard, A Rambaut, P Lemey Molecular biology and evolution 33 (8), 2167-2169, 2016 | 441 | 2016 |