| Chemically accurate coarse graining of double-stranded DNA A Savelyev, GA Papoian Proceedings of the National Academy of Sciences 107 (47), 20340-20345, 2010 | 192 | 2010 |
| Electrostatic, steric, and hydration interactions favor Na+ condensation around DNA compared with K+ A Savelyev, GA Papoian Journal of the American Chemical Society 128 (45), 14506-14518, 2006 | 169 | 2006 |
| All‐atom polarizable force field for DNA based on the classical drude oscillator model A Savelyev, AD MacKerell Jr Journal of computational chemistry 35 (16), 1219-1239, 2014 | 163 | 2014 |
| Recent successes in coarse‐grained modeling of DNA DA Potoyan, A Savelyev, GA Papoian Wiley Interdisciplinary Reviews: Computational Molecular Science 3 (1), 69-83, 2013 | 115 | 2013 |
| Molecular renormalization group coarse-graining of polymer chains: application to double-stranded DNA A Savelyev, GA Papoian Biophysical Journal 96 (10), 4044-4052, 2009 | 104 | 2009 |
| Counterion atmosphere and hydration patterns near a nucleosome core particle CK Materese, A Savelyev, GA Papoian Journal of the American Chemical Society 131 (41), 15005-15013, 2009 | 100 | 2009 |
| Competition among Li+, Na+, K+, and Rb+ Monovalent Ions for DNA in Molecular Dynamics Simulations Using the Additive CHARMM36 and Drude Polarizable … A Savelyev, AD MacKerell Jr The Journal of Physical Chemistry B 119 (12), 4428-4440, 2015 | 95 | 2015 |
| Molecular renormalization group coarse-graining of electrolyte solutions: Application to aqueous NaCl and KCl A Savelyev, GA Papoian The Journal of Physical Chemistry B 113 (22), 7785-7793, 2009 | 95 | 2009 |
| Balancing the interactions of ions, water, and DNA in the Drude polarizable force field A Savelyev, AD MacKerell Jr The Journal of Physical Chemistry B 118 (24), 6742-6757, 2014 | 83 | 2014 |
| Do monovalent mobile ions affect DNA's flexibility at high salt content? A Savelyev Physical Chemistry Chemical Physics 14 (7), 2250-2254, 2012 | 82 | 2012 |
| Inter-DNA electrostatics from explicit solvent molecular dynamics simulations A Savelyev, GA Papoian Journal of the American Chemical Society 129 (19), 6060-6061, 2007 | 80 | 2007 |
| Is DNA’s rigidity dominated by electrostatic or nonelectrostatic interactions? A Savelyev, CK Materese, GA Papoian Journal of the American Chemical Society 133 (48), 19290-19293, 2011 | 75 | 2011 |
| Induced polarization influences the fundamental forces in DNA base flipping JA Lemkul, A Savelyev, AD MacKerell Jr The journal of physical chemistry letters 5 (12), 2077-2083, 2014 | 71 | 2014 |
| Differential Impact of the Monovalent Ions Li+, Na+, K+, and Rb+ on DNA Conformational Properties A Savelyev, AD MacKerell Jr The journal of physical chemistry letters 6 (1), 212-216, 2015 | 57 | 2015 |
| Differential Deformability of the DNA Minor Groove and Altered BI/BII Backbone Conformational Equilibrium by the Monovalent Ions Li+, Na+, K+, and Rb+ via … A Savelyev, AD MacKerell Jr Journal of chemical theory and computation 11 (9), 4473-4485, 2015 | 35 | 2015 |
| Polyionic charge density plays a key role in differential recognition of mobile ions by biopolymers A Savelyev, GA Papoian The Journal of Physical Chemistry B 112 (30), 9135-9145, 2008 | 29 | 2008 |
| GenApp: Extensible tool for rapid generation of web and native GUI applications A Savelyev, E Brookes Future Generation Computer Systems 94, 929-936, 2019 | 24 | 2019 |
| Moving analytical ultracentrifugation software to a good manufacturing practices (GMP) environment A Savelyev, GE Gorbet, A Henrickson, B Demeler PLoS computational biology 16 (6), e1007942, 2020 | 23 | 2020 |
| Wiley Interdiscip DA Potoyan, A Savelyev, GA Papoian Rev.: Comput. Mol. Sci 3, 69-83, 2013 | 18 | 2013 |
| Multi-wavelength analytical ultracentrifugation of biopolymer mixtures and interactions A Henrickson, GE Gorbet, A Savelyev, M Kim, J Hargreaves, SK Schultz, ... Analytical biochemistry 652, 114728, 2022 | 13 | 2022 |
