Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome research 30 (7), 1060-1072, 2020 | 147 | 2020 |
Chromatin accessibility landscape of articular knee cartilage reveals aberrant enhancer regulation in osteoarthritis Y Liu, JC Chang, CC Hon, N Fukui, N Tanaka, Z Zhang, MTM Lee, ... Scientific Reports 8 (1), 15499, 2018 | 48 | 2018 |
Single-Molecule Study of -Quadruplex Disruption Using Dynamic Force Spectroscopy M de Messieres, JC Chang, B Brawn-Cinani, A La Porta Physical review letters 109 (5), 058101, 2012 | 45 | 2012 |
OVOL2 induces mesenchymal-to-epithelial transition in fibroblasts and enhances cell-state reprogramming towards epithelial lineages K Watanabe, Y Liu, S Noguchi, M Murray, JC Chang, M Kishima, ... Scientific Reports 9 (1), 6490, 2019 | 39 | 2019 |
Single-molecule measurements of the CCR5 mRNA unfolding pathways M de Messieres, JC Chang, AT Belew, A Meskauskas, JD Dinman, ... Biophysical Journal 106 (1), 244-252, 2014 | 28 | 2014 |
Effect of handle length and microsphere size on transition kinetics in single-molecule experiments JC Chang, M de Messieres, A La Porta Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 87 (1 …, 2013 | 20 | 2013 |
Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types CW Yip, CC Hon, K Yasuzawa, DM Sivaraman, JA Ramilowski, ... Cell reports 41 (13), 2022 | 17 | 2022 |
The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles J Schreiber, C Boix, J wook Lee, H Li, Y Guan, CC Chang, JC Chang, ... Genome biology 24 (1), 79, 2023 | 11 | 2023 |
Fabrication of birefringent nanocylinders for single-molecule force and torque measurement PC Li, JC Chang, A La Porta, TY Edward Nanotechnology 25 (23), 235304, 2014 | 11 | 2014 |
Profiling of transcribed cis-regulatory elements in single cells J Moody, T Kouno, A Suzuki, Y Shibayama, C Terao, JC Chang, ... bioRxiv, 2021.04. 04.438388, 2021 | 8 | 2021 |
SCAFE: a software suite for analysis of transcribed cis-regulatory elements in single cells J Moody, T Kouno, JC Chang, Y Ando, P Carninci, JW Shin, CC Hon Bioinformatics 38 (22), 5126-5128, 2022 | 5 | 2022 |
Defining super-enhancers by highly ranked histone H4 multi-acetylation levels identifies transcription factors associated with glioblastoma stem-like properties ND Das, JC Chang, CC Hon, ST Kelly, S Ito, M Lizio, B Kaczkowski, ... BMC genomics 24 (1), 574, 2023 | 4 | 2023 |
A single-cell atlas of transcribed cis-regulatory elements in the human genome J Moody, T Kouno, M Kojima, I Koya, J Leon, A Suzuki, A Hasegawa, ... bioRxiv, 2023.11. 13.566791, 2023 | 3 | 2023 |
Development of single-molecule force and torque measurement with application to nucleosome disruption JC Chang University of Maryland, College Park, 2014 | | 2014 |