关注
Dylan Chivian
Dylan Chivian
Staff Scientist, LLNL
在 llnl.gov 的电子邮件经过验证
标题
引用次数
引用次数
年份
Protein structure prediction and analysis using the Robetta server
DE Kim, D Chivian, D Baker
Nucleic acids research 32 (suppl_2), W526-W531, 2004
21652004
KBase: the United States department of energy systems biology knowledgebase
AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ...
Nature biotechnology 36 (7), 566-569, 2018
10782018
A genomic catalog of Earth’s microbiomes
S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ...
Nature biotechnology 39 (4), 499-509, 2021
5862021
MicrobesOnline: an integrated portal for comparative and functional genomics
PS Dehal, MP Joachimiak, MN Price, JT Bates, JK Baumohl, D Chivian, ...
Nucleic acids research 38 (suppl_1), D396-D400, 2010
5322010
Environmental genomics reveals a single-species ecosystem deep within Earth
D Chivian, EL Brodie, EJ Alm, DE Culley, PS Dehal, TZ DeSantis, ...
Science 322 (5899), 275-278, 2008
5292008
Modeling structurally variable regions in homologous proteins with rosetta
CA Rohl, CEM Strauss, D Chivian, D Baker
Proteins: Structure, Function, and Bioinformatics 55 (3), 656-677, 2004
4242004
Rosetta in CASP4: progress in ab initio protein structure prediction
R Bonneau, J Tsai, I Ruczinski, D Chivian, C Rohl, CEM Strauss, D Baker
Proteins: Structure, Function, and Bioinformatics 45 (S5), 119-126, 2001
4092001
Automated prediction of CASP‐5 structures using the Robetta server
D Chivian, DE Kim, L Malmström, P Bradley, T Robertson, P Murphy, ...
Proteins: Structure, Function, and Bioinformatics 53 (S6), 524-533, 2003
3712003
De novo prediction of three-dimensional structures for major protein families
R Bonneau, CEM Strauss, CA Rohl, D Chivian, P Bradley, L Malmström, ...
Journal of molecular biology 322 (1), 65-78, 2002
3302002
Structure prediction for CASP7 targets using extensive all‐atom refinement with Rosetta@ home
R Das, B Qian, S Raman, R Vernon, J Thompson, P Bradley, S Khare, ...
Proteins: Structure, Function, and Bioinformatics 69 (S8), 118-128, 2007
2742007
Rosetta predictions in CASP5: successes, failures, and prospects for complete automation
P Bradley, D Chivian, J Meiler, KMS Misura, CA Rohl, WR Schief, ...
Proteins: Structure, Function, and Bioinformatics 53 (S6), 457-468, 2003
2482003
Physically realistic homology models built with rosetta can be more accurate than their templates
KMS Misura, D Chivian, CA Rohl, DE Kim, D Baker
Proceedings of the National Academy of Sciences 103 (14), 5361-5366, 2006
2272006
Free modeling with Rosetta in CASP6
P Bradley, L Malmström, B Qian, J Schonbrun, D Chivian, DE Kim, ...
Proteins: Structure, Function, and Bioinformatics 61 (S7), 128-134, 2005
2012005
Prediction of CASP6 structures using automated Robetta protocols
D Chivian, DE Kim, L Malmström, J Schonbrun, CA Rohl, D Baker
Proteins: Structure, Function, and Bioinformatics 61 (S7), 157-166, 2005
1972005
Optimization of a heterologous mevalonate pathway through the use of variant HMG-CoA reductases
SM Ma, DE Garcia, AM Redding-Johanson, GD Friedland, R Chan, ...
Metabolic engineering 13 (5), 588-597, 2011
1822011
Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection
D Chivian, D Baker
Nucleic acids research 34 (17), e112-e112, 2006
1452006
Automated prediction of domain boundaries in CASP6 targets using Ginzu and RosettaDOM
DE Kim, D Chivian, L Malmström, D Baker
Proteins: Structure, Function, and Bioinformatics 61 (S7), 193-200, 2005
1142005
Complete genome sequence of “Enterobacter lignolyticus” SCF1
KM DeAngelis, P D’Haeseleer, D Chivian, JL Fortney, J Khudyakov, ...
Standards in genomic sciences 5, 69-85, 2011
872011
The DOE systems biology knowledgebase (KBase)
AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ...
BioRxiv, 096354, 2016
792016
Single cell genomics indicates horizontal gene transfer and viral infections in a deep subsurface Firmicutes population
JM Labonté, EK Field, M Lau, D Chivian, E Van Heerden, KE Wommack, ...
Frontiers in microbiology 6, 137143, 2015
752015
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