| The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis TM Walker, P Miotto, CU Köser, PW Fowler, J Knaggs, Z Iqbal, M Hunt, ... The Lancet Microbe 3 (4), e265-e273, 2022 | 171 | 2022 |
| Comprehensive whole-genome sequencing and reporting of drug resistance profiles on clinical cases of Mycobacterium tuberculosis in New York State J Shea, TA Halse, P Lapierre, M Shudt, D Kohlerschmidt, P Van Roey, ... Journal of clinical microbiology 55 (6), 1871-1882, 2017 | 139 | 2017 |
| Assessing nanopore sequencing for clinical diagnostics: a comparison of next-generation sequencing (NGS) methods for Mycobacterium tuberculosis C Smith, TA Halse, J Shea, H Modestil, RC Fowler, KA Musser, V Escuyer, ... Journal of clinical microbiology 59 (1), 10.1128/jcm. 00583-20, 2020 | 67 | 2020 |
| Low-Level Rifampin Resistance and rpoB Mutations in Mycobacterium tuberculosis: an Analysis of Whole-Genome Sequencing and Drug Susceptibility Test Data … J Shea, TA Halse, D Kohlerschmidt, P Lapierre, HA Modestil, CH Kearns, ... Journal of clinical microbiology 59 (4), 10.1128/jcm. 01885-20, 2021 | 57 | 2021 |
| Mycobacterium orygis lymphadenitis in New York, USA LA Marcos, ED Spitzer, R Mahapatra, Y Ma, TA Halse, J Shea, M Isabelle, ... Emerging Infectious Diseases 23 (10), 1749, 2017 | 30 | 2017 |
| Direct detection of drug-resistant Mycobacterium tuberculosis using targeted next generation sequencing SG Murphy, C Smith, P Lapierre, J Shea, K Patel, TA Halse, M Dickinson, ... Frontiers in Public Health 11, 1206056, 2023 | 11 | 2023 |
| Novel Mycobacterium tuberculosis Complex Genotype Related to M. caprae J Shea, C Smith, TA Halse, D Kohlerschmidt, AK Rourke, KA Musser, ... Emerging Infectious Diseases 28 (7), 1431, 2022 | 3 | 2022 |
| Mycobacterium tuberculosis complex whole-genome sequencing in New York State: Implementation of a reduced phenotypic drug susceptibility testing algorithm J Shea, TA Halse, H Modestil, C Kearns, RC Fowler, CA Da Costa-Carter, ... Tuberculosis 142, 102380, 2023 | | 2023 |
| Draft Genome Sequence of Branchiibius sp. NY16-3462-2, Isolated from a Mixed Clinical Sample P Lapierre, TA Halse, J Shea, VE Escuyer, KA Musser Genome Announcements 4 (3), 10.1128/genomea. 00368-16, 2016 | | 2016 |
| iValiD-TB: A fully characterized Mycobacterium tuberculosis dataset for antimicrobial resistance bioinformatics workflow validations P Lapierre, J Shea, S Murphy, C Smith, D Kohlerschmidt, M Dickinson, ... Frontiers in Tuberculosis 2, 1441923, 0 | | |
