| Basal breast cancer molecular subtype predicts for lower incidence of axillary lymph node metastases in primary breast cancer SJ Crabb, MCU Cheang, S Leung, T Immonen, TO Nielsen, ... Clinical breast cancer 8 (3), 249-256, 2008 | 200 | 2008 |
| Genetically-barcoded SIV facilitates enumeration of rebound variants and estimation of reactivation rates in nonhuman primates following interruption of suppressive … CM Fennessey, M Pinkevych, TT Immonen, A Reynaldi, V Venturi, ... PLoS pathogens 13 (5), e1006359, 2017 | 85 | 2017 |
| Divergent evolution in reverse transcriptase (RT) of HIV-1 group O and M lineages: impact on structure, fitness, and sensitivity to nonnucleoside RT inhibitors DM Tebit, M Lobritz, M Lalonde, T Immonen, K Singh, S Sarafianos, ... Journal of virology 84 (19), 9817-9830, 2010 | 47 | 2010 |
| Principles governing establishment versus collapse of HIV-1 cellular spread JM Hataye, JP Casazza, K Best, CJ Liang, TT Immonen, DR Ambrozak, ... Cell host & microbe 26 (6), 748-763. e20, 2019 | 34 | 2019 |
| In Vivo Validation of the Viral Barcoding of Simian Immunodeficiency Virus SIVmac239 and the Development of New Barcoded SIV and Subtype B and C Simian … S Khanal, CM Fennessey, SP O’Brien, A Thorpe, C Reid, TT Immonen, ... Journal of virology 94 (1), 10.1128/jvi. 01420-19, 2019 | 31 | 2019 |
| Defining early SIV replication and dissemination dynamics following vaginal transmission C Deleage, TT Immonen, CM Fennessey, A Reynaldi, C Reid, L Newman, ... Science advances 5 (5), eaav7116, 2019 | 29 | 2019 |
| Recombination enhances HIV-1 envelope diversity by facilitating the survival of latent genomic fragments in the plasma virus population TT Immonen, JM Conway, EO Romero-Severson, AS Perelson, T Leitner PLoS computational biology 11 (12), e1004625, 2015 | 26 | 2015 |
| Rational design and in vivo selection of SHIVs encoding transmitted/founder subtype C HIV-1 envelopes SP O’Brien, AE Swanstrom, A Pegu, SY Ko, TT Immonen, GQ Del Prete, ... PLoS pathogens 15 (4), e1007632, 2019 | 23 | 2019 |
| Reduced evolutionary rates in HIV-1 reveal extensive latency periods among replicating lineages TT Immonen, T Leitner Retrovirology 11, 1-11, 2014 | 20 | 2014 |
| Antibody-mediated depletion of viral reservoirs is limited in SIV-infected macaques treated early with antiretroviral therapy AE Swanstrom, TT Immonen, K Oswald, C Pyle, JA Thomas, WJ Bosche, ... The Journal of clinical investigation 131 (6), 2021 | 17 | 2021 |
| Genetically barcoded SIV reveals the emergence of escape mutations in multiple viral lineages during immune escape TT Immonen, C Camus, C Reid, CM Fennessey, GQ Del Prete, ... Proceedings of the National Academy of Sciences 117 (1), 494-502, 2020 | 16 | 2020 |
| A hybrid stochastic–deterministic computational model accurately describes spatial dynamics and virus diffusion in HIV-1 growth competition assay T Immonen, R Gibson, T Leitner, MA Miller, EJ Arts, E Somersalo, ... Journal of theoretical biology 312, 120-132, 2012 | 15 | 2012 |
| Transient viral replication during analytical treatment interruptions in SIV infected macaques can alter the rebound-competent viral reservoir TT Immonen, CM Fennessey, L Lipkey, A Thorpe, GQ Del Prete, JD Lifson, ... PLoS Pathogens 17 (6), e1009686, 2021 | 11 | 2021 |
| Dual infection and recombination of Kaposi sarcoma herpesvirus revealed by whole-genome sequence analysis of effusion samples EM Cornejo Castro, V Marshall, J Lack, K Lurain, T Immonen, N Labo, ... Virus Evolution 6 (2), veaa047, 2020 | 9 | 2020 |
| Defining early SIV replication and dissemination dynamics following vaginal transmission. Sci Adv 5: eaav7116 C Deleage, TT Immonen, CM Fennessey, A Reynaldi, C Reid, L Newman, ... | 9 | 2019 |
| Software classification using phylogenetic techniques S Steinfadt, T Immonen, T Leitner, M Kyle US Patent 10,783,247, 2020 | 5 | 2020 |
| Low-level alternative tRNA priming of reverse transcription of HIV-1 and SIV in vivo CM Fennessey, C Camus, TT Immonen, C Reid, F Maldarelli, JD Lifson, ... Retrovirology 16, 1-11, 2019 | 4 | 2019 |
| Assessing individual viral reactivations of the latent reservoir using a novel barcoded virus C Fennessey, M Pinkevych, T Immonen, C Camus, G Del Prete, J Estes, ... Journal of the International AIDS Society 20 (Suppl 5), 22253, 2017 | 4 | 2017 |
| Modeling HIV-1 dynamics and fitness in cell culture across scales T Immonen, E Somersalo, D Calvetti Bulletin of mathematical biology 76, 486-514, 2014 | 4 | 2014 |
| Early antiretroviral therapy in SIV-infected rhesus macaques reveals a multiphasic, saturable dynamic accumulation of the rebound competent viral reservoir BF Keele, AA Okoye, CM Fennessey, B Varco-Merth, TT Immonen, ... Plos Pathogens 20 (4), e1012135, 2024 | 2 | 2024 |
