| ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis JM Granja, MR Corces, SE Pierce, ST Bagdatli, H Choudhry, HY Chang, ... Nature genetics 53 (3), 403-411, 2021 | 714 | 2021 |
| Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion AT Satpathy, JM Granja, KE Yost, Y Qi, F Meschi, GP McDermott, ... Nature biotechnology 37 (8), 925-936, 2019 | 697 | 2019 |
| Integrin-β4 identifies cancer stem cell-enriched populations of partially mesenchymal carcinoma cells B Bierie, SE Pierce, C Kroeger, DG Stover, DR Pattabiraman, P Thiru, ... Proceedings of the National Academy of Sciences 114 (12), E2337-E2346, 2017 | 306 | 2017 |
| CRISPR screens in cancer spheroids identify 3D growth-specific vulnerabilities K Han, SE Pierce, A Li, K Spees, GR Anderson, JA Seoane, YH Lo, ... Nature 580 (7801), 136-141, 2020 | 235 | 2020 |
| High-throughput single-cell chromatin accessibility CRISPR screens enable unbiased identification of regulatory networks in cancer SE Pierce, JM Granja, WJ Greenleaf Nature communications 12 (1), 2969, 2021 | 98 | 2021 |
| Zmat3 is a key splicing regulator in the p53 tumor suppression program KT Bieging-Rolett, AM Kaiser, DW Morgens, AM Boutelle, JA Seoane, ... Molecular cell 80 (3), 452-469. e9, 2020 | 56 | 2020 |
| LKB1 inactivation modulates chromatin accessibility to drive metastatic progression SE Pierce, JM Granja, MR Corces, JJ Brady, MK Tsai, AB Pierce, R Tang, ... Nature cell biology 23 (8), 915-924, 2021 | 31 | 2021 |
| Author Correction: ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis JM Granja, MR Corces, SE Pierce, ST Bagdatli, H Choudhry, HY Chang, ... Nature Genetics 53 (6), 935, 2021 | 31 | 2021 |
| LKB1 drives stasis and C/EBP-mediated reprogramming to an alveolar type II fate in lung cancer CW Murray, JJ Brady, M Han, H Cai, MK Tsai, SE Pierce, R Cheng, ... Nature communications 13 (1), 1090, 2022 | 9 | 2022 |
| A high-throughput platform for single-molecule tracking identifies drug interaction and cellular mechanisms DT McSwiggen, H Liu, R Tan, SA Puig, LB Akella, R Berman, M Bretan, ... bioRxiv, 2023.01. 05.522916, 2023 | 6 | 2023 |
| Finding needles in a haystack: dissecting tumor heterogeneity with single-cell transcriptomic and chromatin accessibility profiling SE Pierce, SH Kim, WJ Greenleaf Current Opinion in Genetics & Development 66, 36-40, 2021 | 5 | 2021 |
| Efficient site-specific integration of large genes in mammalian cells via continuously evolved recombinases and prime editing S Pandey, XD Gao, NA Krasnow, A McElroy, YA Tao, JE Duby, ... Nature Biomedical Engineering, 1-18, 2024 | | 2024 |
| High-throughput single particle tracking reveals estrogen receptor protein interaction landscape in living cells D McSwiggen, H Liu, H Chen, A Heckert, J Ho, SL Johnson, L Akella, ... Biophysical Journal 122 (3), 277a, 2023 | | 2023 |
| Genotype-Specific Chromatin Accessibility States in Cancer SE Pierce Stanford University, 2021 | | 2021 |
