| JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles JA Castro-Mondragon, R Riudavets-Puig, I Rauluseviciute, ... Nucleic acids research 50 (D1), D165-D173, 2022 | 1424 | 2022 |
| JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles I Rauluseviciute, R Riudavets-Puig, R Blanc-Mathieu, ... Nucleic Acids Research 52 (D1), D174-D182, 2024 | 224 | 2024 |
| UniBind: maps of high-confidence direct TF-DNA interactions across nine species RR Puig, P Boddie, A Khan, JA Castro-Mondragon, A Mathelier BMC genomics 22 (1), 482, 2021 | 71 | 2021 |
| BiasAway: command-line and web server to generate nucleotide composition-matched DNA background sequences A Khan, R Riudavets Puig, P Boddie, A Mathelier Bioinformatics 37 (11), 1607-1609, 2021 | 19 | 2021 |
| The Cytoscape BioGateway App: explorative network building from an RDF store S Holmås, R Riudavets Puig, ML Acencio, V Mironov, M Kuiper Bioinformatics 36 (6), 1966-1967, 2020 | 19 | 2020 |
| Network building with the Cytoscape BioGateway app explained in five use cases RR Puig, S Holmås, V Mironov, M Kuiper Current Protocols in Bioinformatics 72 (1), e106, 2020 | 7 | 2020 |
| Deciphering transcriptional regulation and its role in cancer RR Puig | | 2024 |
