| SC3: consensus clustering of single-cell RNA-seq data VY Kiselev, K Kirschner, MT Schaub, T Andrews, A Yiu, T Chandra, ... Nature methods 14 (5), 483-486, 2017 | 1357 | 2017 |
| Challenges in unsupervised clustering of single-cell RNA-seq data VY Kiselev, TS Andrews, M Hemberg Nature Reviews Genetics 20 (5), 273-282, 2019 | 960 | 2019 |
| EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data ATL Lun, S Riesenfeld, T Andrews, TP Dao, T Gomes, ... Genome biology 20, 1-9, 2019 | 668 | 2019 |
| Identifying cell populations with scRNASeq TS Andrews, M Hemberg Molecular aspects of medicine 59, 114-122, 2018 | 285 | 2018 |
| M3Drop: dropout-based feature selection for scRNASeq TS Andrews, M Hemberg Bioinformatics 35 (16), 2865-2867, 2019 | 266 | 2019 |
| Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data TS Andrews, VY Kiselev, D McCarthy, M Hemberg Nature protocols 16 (1), 1-9, 2021 | 252 | 2021 |
| The Malaria Cell Atlas: Single parasite transcriptomes across the complete Plasmodium life cycle VM Howick, AJC Russell, T Andrews, H Heaton, AJ Reid, K Natarajan, ... Science 365 (6455), eaaw2619, 2019 | 224 | 2019 |
| participants in the 1st Human Cell Atlas Jamboree, et al. EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data ATL Lun, S Riesenfeld, T Andrews, TP Dao, T Gomes, JC Marioni Genome Biol 20 (1), 63, 2019 | 210 | 2019 |
| False signals induced by single-cell imputation TS Andrews, M Hemberg F1000Research 7, 2018 | 181 | 2018 |
| Tutorial: guidelines for annotating single-cell transcriptomic maps using automated and manual methods ZA Clarke, TS Andrews, J Atif, D Pouyabahar, BT Innes, SA MacParland, ... Nature protocols 16 (6), 2749-2764, 2021 | 134 | 2021 |
| Single‐cell, single‐nucleus, and spatial RNA sequencing of the human liver identifies cholangiocyte and mesenchymal heterogeneity TS Andrews, J Atif, JC Liu, CT Perciani, XZ Ma, C Thoeni, M Slyper, ... Hepatology Communications 6 (4), 821-840, 2022 | 131 | 2022 |
| participants in the 1st Human Cell Atlas Jamboree, and Marioni, JC (2019). EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data ATL Lun, S Riesenfeld, T Andrews, TP Dao, T Gomes Genome Biol 20 (63), 10.1186, 0 | 83 | |
| Phosphorylation switches Bax from promoting to inhibiting apoptosis thereby increasing drug resistance J Kale, O Kutuk, GC Brito, TS Andrews, B Leber, A Letai, DW Andrews EMBO reports 19 (9), e45235, 2018 | 82 | 2018 |
| Single-cell atlas of the first intra-mammalian developmental stage of the human parasite Schistosoma mansoni CL Diaz Soria, J Lee, T Chong, A Coghlan, A Tracey, MD Young, ... Nature communications 11 (1), 6411, 2020 | 67 | 2020 |
| Single-cell transcriptomics reveals a new dynamical function of transcription factors during embryonic hematopoiesis I Bergiers, T Andrews, Ö Vargel Bölükbaşı, A Buness, E Janosz, ... Elife 7, e29312, 2018 | 45 | 2018 |
| The clustering of functionally related genes contributes to CNV-mediated disease T Andrews, F Honti, R Pfundt, N De Leeuw, J Hehir-Kwa, ... Genome research 25 (6), 802-813, 2015 | 34 | 2015 |
| Publisher Correction: Challenges in unsupervised clustering of single-cell RNA-seq data. VY Kiselev, TS Andrews, M Hemberg Nature reviews. Genetics 20 (5), 310-310, 2019 | 33 | 2019 |
| Gene networks underlying convergent and pleiotropic phenotypes in a large and systematically-phenotyped cohort with heterogeneous developmental disorders T Andrews, S Meader, A Vulto-van Silfhout, A Taylor, J Steinberg, ... PLoS genetics 11 (3), e1005012, 2015 | 17 | 2015 |
| GeneNet Toolbox for MATLAB: a flexible platform for the analysis of gene connectivity in biological networks A Taylor, J Steinberg, TS Andrews, C Webber Bioinformatics 31 (3), 442-444, 2015 | 15 | 2015 |
| Modelling dropouts allows for unbiased identification of marker genes in scRNASeq experiments TS Andrews, M Hemberg biorxiv 65094, 2016 | 14 | 2016 |
