JASPAR 2020: update of the open-access database of transcription factor binding profiles O Fornes, JA Castro-Mondragon, A Khan, R Van der Lee, X Zhang, ... Nucleic acids research 48 (D1), D87-D92, 2020 | 1799 | 2020 |
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework A Khan, O Fornes, A Stigliani, M Gheorghe, JA Castro-Mondragon, ... Nucleic acids research 46 (D1), D260-D266, 2018 | 1650 | 2018 |
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles JA Castro-Mondragon, R Riudavets-Puig, I Rauluseviciute, ... Nucleic acids research 50 (D1), D165-D173, 2022 | 1216 | 2022 |
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles I Rauluseviciute, R Riudavets-Puig, R Blanc-Mathieu, ... Nucleic Acids Research 52 (D1), D174-D182, 2024 | 89 | 2024 |
KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome WC Dunlap, A Starcevic, D Baranasic, J Diminic, J Zucko, R Gacesa, ... BMC genomics 14, 1-59, 2013 | 65 | 2013 |
Predicting substrate specificity of adenylation domains of nonribosomal peptide synthetases and other protein properties by latent semantic indexing D Baranašić, J Zucko, J Diminic, R Gacesa, PF Long, J Cullum, ... Journal of Industrial Microbiology and Biotechnology 41 (2), 461-467, 2014 | 55 | 2014 |
Draft genome sequence of Streptomyces rapamycinicus strain NRRL 5491, the producer of the immunosuppressant rapamycin D Baranasic, R Gacesa, A Starcevic, J Zucko, M Blažič, M Horvat, ... Genome announcements 1 (4), 10.1128/genomea. 00581-13, 2013 | 52 | 2013 |
Bacterial diversity of polluted surface sediments in the northern Adriatic Sea M Korlević, J Zucko, MN Dragić, M Blažina, E Pustijanac, TV Zeljko, ... Systematic and applied microbiology 38 (3), 189-197, 2015 | 45 | 2015 |
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements D Baranasic, M Hörtenhuber, PJ Balwierz, T Zehnder, AK Mukarram, ... Nature genetics 54 (7), 1037-1050, 2022 | 37 | 2022 |
Evolutionary concepts in natural products discovery: what actinomycetes have taught us J Diminic, A Starcevic, M Lisfi, D Baranasic, R Gacesa, D Hranueli, ... Journal of Industrial Microbiology and Biotechnology 41 (2), 211-217, 2014 | 31 | 2014 |
Annotation of the modular polyketide synthase and nonribosomal peptide synthetase gene clusters in the genome of Streptomyces tsukubaensis NRRL18488 M Blažič, A Starcevic, M Lisfi, D Baranasic, D Goranovič, Š Fujs, E Kuščer, ... Applied and environmental microbiology 78 (23), 8183-8190, 2012 | 20 | 2012 |
Genomic characterization of variable surface antigens reveals a telomere position effect as a prerequisite for RNA interference-mediated silencing in Paramecium tetraurelia D Baranasic, T Oppermann, M Cheaib, J Cullum, H Schmidt, M Simon MBio 5 (6), 10.1128/mbio. 01328-14, 2014 | 18 | 2014 |
Bioprospecting for genes encoding hydrocarbon-degrading enzymes from metagenomic samples isolated from northern adriatic sea sediments R Gacesa, D Baranasic, A Starcevic, J Diminic, M Korlević, M Najdek, ... Food technology and biotechnology 56 (2), 270, 2018 | 12 | 2018 |
Genome sequences of the oxytetracycline production strain Streptomyces rimosus R6-500 and two mutants with chromosomal rearrangements D Baranasic, J Zucko, M Nair, A Pain, PF Long, D Hranueli, J Cullum, ... Genome announcements 2 (4), 10.1128/genomea. 00517-14, 2014 | 9 | 2014 |
Synthetic biology: A novel approach for the construction of industrial microorganisms D Hranueli, A Starcevic, J Zucko, J Diego Rojas, J Diminic, D Baranasic, ... Food technology and biotechnology 51 (1), 3-11, 2013 | 9 | 2013 |
Genome sequence of Streptomyces olindensis DAUFPE 5622, producer of the antitumoral anthracycline cosmomycin D JD Rojas, A Starcevic, D Baranas̆ić, MA Ferreira-Torres, CA Contreras, ... Genome Announc. 2 (3), e00541-14, 2014 | 8 | 2014 |
Integrative genomic analyses in adipocytes implicate DNA methylation in human obesity and diabetes L McAllan, D Baranasic, S Villicaña, S Brown, W Zhang, B Lehne, ... Nature communications 14 (1), 2784, 2023 | 7 | 2023 |
Reference-grade genome and large linear plasmid of Streptomyces rimosus: pushing the limits of nanopore sequencing L Slemc, J Jakše, A Filisetti, D Baranasic, A Rodríguez-García, ... Microbiology spectrum 10 (2), e02434-21, 2022 | 7 | 2022 |
Integrated annotation and analysis of genomic features reveal new types of functional elements and large-scale epigenetic phenomena in the developing zebrafish D Baranasic, M Hörtenhuber, P Balwierz, T Zehnder, AK Mukarram, ... bioRxiv, 2021.08. 09.454869, 2021 | 6 | 2021 |
Zebrafish regulatory genomic resources for disease modelling and regeneration A Jimenez Gonzalez, D Baranasic, F Müller Disease Models & Mechanisms 16 (8), 2023 | 2 | 2023 |