| A multi-organ nucleus segmentation challenge N Kumar, R Verma, D Anand, Y Zhou, OF Onder, E Tsougenis, H Chen, ... IEEE transactions on medical imaging 39 (5), 1380-1391, 2019 | 388 | 2019 |
| CNN-based preprocessing to optimize watershed-based cell segmentation in 3D confocal microscopy images D Eschweiler, TV Spina, RC Choudhury, E Meyerowitz, A Cunha, ... 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019 …, 2019 | 68 | 2019 |
| Using positional information to provide context for biological image analysis with MorphoGraphX 2.0 S Strauss, A Runions, B Lane, D Eschweiler, N Bajpai, N Trozzi, ... Elife 11, e72601, 2022 | 41 | 2022 |
| Segmenting renal whole slide images virtually without training data M Gadermayr, D Eschweiler, A Jeevanesan, BM Klinkhammer, P Boor, ... Computers in biology and medicine 90, 88-97, 2017 | 28 | 2017 |
| Robust 3D cell segmentation: extending the view of cellpose D Eschweiler, RS Smith, J Stegmaier 2022 IEEE International Conference on Image Processing (ICIP), 191-195, 2022 | 20 | 2022 |
| 3D fluorescence microscopy data synthesis for segmentation and benchmarking D Eschweiler, M Rethwisch, M Jarchow, S Koppers, J Stegmaier Plos one 16 (12), e0260509, 2021 | 16 | 2021 |
| Gradual domain adaptation for segmenting whole slide images showing pathological variability M Gadermayr, D Eschweiler, BM Klinkhammer, P Boor, D Merhof Image and Signal Processing: 8th International Conference, ICISP 2018 …, 2018 | 14 | 2018 |
| CellCycleGAN: Spatiotemporal microscopy image synthesis of cell populations using statistical shape models and conditional GANs D Bähr, D Eschweiler, A Bhattacharyya, D Moreno-Andrés, W Antonin, ... 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 15-19, 2021 | 13 | 2021 |
| Towards annotation-free segmentation of fluorescently labeled cell membranes in confocal microscopy images D Eschweiler, T Klose, FN Müller-Fouarge, M Kopaczka, J Stegmaier Simulation and Synthesis in Medical Imaging: 4th International Workshop …, 2019 | 12 | 2019 |
| Spherical harmonics for shape-constrained 3D cell segmentation D Eschweiler, M Rethwisch, S Koppers, J Stegmaier 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 792-796, 2021 | 11 | 2021 |
| Krishanu Das Baksi, Mohammad Azam Khan, Jaegul Choo, Adrián Colomer, Valery Naranjo, Linmin Pei, Khan M N Kumar, R Verma, D Anand, Y Zhou, OF Onder, E Tsougenis, H Chen, ... Iftekharuddin, Kaushiki Roy, Debotosh Bhattacharjee, Anibal Pedraza, Maria …, 2020 | 9 | 2020 |
| Comparison of deep learning-based techniques for organ segmentation in abdominal CT images V Groza, T Brosch, D Eschweiler, H Schulz, S Renisch, H Nickisch | 9 | 2018 |
| Denoising diffusion probabilistic models for generation of realistic fully-annotated microscopy image datasets D Eschweiler, R Yilmaz, M Baumann, I Laube, R Roy, A Jose, D Brückner, ... PLOS Computational Biology 20 (2), e1011890, 2024 | 8 | 2024 |
| Semi-and self-supervised multi-view fusion of 3D microscopy images using generative adversarial networks C Yang, D Eschweiler, J Stegmaier International Workshop on Machine Learning for Medical Image Reconstruction …, 2021 | 7 | 2021 |
| MorphoGraphX 2.0: providing context for biological image analysis with positional information S Strauss, A Runions, B Lane, D Eschweiler, N Bajpai, N Trozzi, ... BioRxiv, 2021.08. 12.456042, 2021 | 7 | 2021 |
| End-to-end classification of cell-cycle stages with center-cell focus tracker using recurrent neural networks A Jose, R Roy, D Eschweiler, I Laube, R Azad, D Moreno-Andrés, ... ICASSP 2023-2023 IEEE International Conference on Acoustics, Speech and …, 2023 | 3 | 2023 |
| Retinal OCT Synthesis with Denoising Diffusion Probabilistic Models for Layer Segmentation Y Wu, W He, D Eschweiler, N Dou, Z Fan, S Mi, P Walter, J Stegmaier arXiv preprint arXiv:2311.05479, 2023 | 1 | 2023 |
| Definition and Quantification of Three-Dimensional Imaging Targets to Phenotype Pre-Eclampsia Subtypes: An Exploratory Study S Hermans, J Pilon, D Eschweiler, J Stegmaier, CAH Severens–Rijvers, ... International Journal of Molecular Sciences 24 (4), 3240, 2023 | 1 | 2023 |
| Probabilistic Image Diversification to Improve Segmentation in 3D Microscopy Image Data D Eschweiler, J Schock, J Stegmaier International Workshop on Simulation and Synthesis in Medical Imaging, 24-33, 2022 | 1 | 2022 |
| Algorithms used for the Cell Segmentation Benchmark Competition at ISBI 2019 by RWTH-GE D Eschweiler, J Stegmaier arXiv preprint arXiv:1904.06890, 2019 | 1 | 2019 |
