| Molecular design in synthetically accessible chemical space via deep reinforcement learning J Horwood, E Noutahi ACS omega 5 (51), 32984-32994, 2020 | 63 | 2020 |
| Single-cell profiling reveals that eRNA accumulation at enhancer–promoter loops is not required to sustain transcription S Rahman, CE Zorca, T Traboulsi, E Noutahi, MR Krause, S Mader, ... Nucleic acids research 45 (6), 3017-3030, 2017 | 53 | 2017 |
| Efficient gene tree correction guided by species and synteny evolution E Noutahi, M Semeria, M Lafond, J Seguin, B Boussau, L Guéguen, ... PLoS One 11 (8), e0159559, 2016 | 52* | 2016 |
| Towards interpretable sparse graph representation learning with laplacian pooling E Noutahi, D Beaini, J Horwood, S Giguère, P Tossou arXiv preprint arXiv:1905.11577, 2019 | 39 | 2019 |
| The nuclear genome of Rhazya stricta and the evolution of alkaloid diversity in a medically relevant clade of Apocynaceae JSM Sabir, RK Jansen, D Arasappan, V Calderon, E Noutahi, C Zheng, ... Scientific reports 6 (1), 33782, 2016 | 30 | 2016 |
| Rapid genetic code evolution in green algal mitochondrial genomes E Noutahi, V Calderon, M Blanchette, N El-Mabrouk, BF Lang Molecular Biology and Evolution 36 (4), 766-783, 2019 | 23 | 2019 |
| Evolution through segmental duplications and losses: a Super-Reconciliation approach M Delabre, N El-Mabrouk, KT Huber, M Lafond, V Moulton, E Noutahi, ... Algorithms for Molecular Biology 15, 1-15, 2020 | 15 | 2020 |
| Efficient non-binary gene tree resolution with weighted reconciliation cost M Lafond, E Noutahi, N El-Mabrouk 27th Annual Symposium on Combinatorial Pattern Matching (CPM 2016), 2016 | 13 | 2016 |
| Gene family evolution—an algorithmic framework N El-Mabrouk, E Noutahi Bioinformatics and Phylogenetics: Seminal Contributions of Bernard Moret, 87-119, 2019 | 12 | 2019 |
| CoreTracker: accurate codon reassignment prediction, applied to mitochondrial genomes E Noutahi, V Calderon, M Blanchette, BF Lang, N El-Mabrouk Bioinformatics, 2017 | 11 | 2017 |
| Reconstructing the history of syntenies through super-reconciliation M Delabre, N El-Mabrouk, KT Huber, M Lafond, V Moulton, E Noutahi, ... Comparative Genomics: 16th International Conference, RECOMB-CG 2018, Magog …, 2018 | 7 | 2018 |
| Three-dimensional structure model and predicted ATP interaction rewiring of a deviant RNA ligase 2 S Moreira, E Noutahi, G Lamoureux, G Burger BMC Structural Biology 15, 1-15, 2015 | 7 | 2015 |
| Real-world molecular out-of-distribution: Specification and investigation P Tossou, C Wognum, M Craig, H Mary, E Noutahi Journal of Chemical Information and Modeling 64 (3), 697-711, 2024 | 5 | 2024 |
| Gu eguen L, El-Mabrouk N, Tannier E. 2016. Efficient gene tree correction guided by genome evolution E Noutahi, M Semeria, M Lafond, J Seguin, B Boussau PLoS One 11 (8), e0159559, 0 | 5 | |
| GATC: a genetic algorithm for gene tree construction under the Duplication-Transfer-Loss model of evolution E Noutahi, N El-Mabrouk BMC genomics 19, 97-107, 2018 | 4 | 2018 |
| Gotta be SAFE: a new framework for molecular design E Noutahi, C Gabellini, M Craig, JSC Lim, P Tossou Digital Discovery 3 (4), 796-804, 2024 | 3 | 2024 |
| Genome evolution-aware gene trees E Noutahi, M Semeria, M Lafond, J Seguin, B Boussau, L Guéguen, ... | 2 | 2015 |
| MoDTI: Modular framework for evaluating inductive biases in DTI modeling RH Eyono, P Tossou, C Wognum, E Noutahi ICLR 2023-Machine Learning for Drug Discovery Workshop, 2023 | 1 | 2023 |
| Role of Structural and Conformational Diversity for Machine Learning Potentials N Shenoy, P Tossou, E Noutahi, H Mary, D Beaini, J Ding arXiv preprint arXiv:2311.00862, 2023 | | 2023 |
| Efficient gene tree correction guided by genome evolution E Noutahi, M Semeria, M Lafond, J Seguin, B Boussau, L Guéguen, ... | | |
