Tracer v1.6 http://beast.community A Rambaut, AJ Drummond, D Xie, G Baele, MA Suchard | 14218* | 2014 |
BEAST: Bayesian evolutionary analysis by sampling trees AJ Drummond, A Rambaut BMC evolutionary biology 7, 1-8, 2007 | 13949 | 2007 |
Bayesian phylogenetics with BEAUti and the BEAST 1.7 AJ Drummond, MA Suchard, D Xie, A Rambaut Molecular biology and evolution 29 (8), 1969-1973, 2012 | 10791 | 2012 |
FigTree, version 1.4.3 A Rambaut Computer program distributed by the author, website: http://tree.bio.ed.ac …, 2009 | 10057* | 2009 |
Posterior summarization in Bayesian phylogenetics using Tracer 1.7 A Rambaut, AJ Drummond, D Xie, G Baele, MA Suchard Systematic biology 67 (5), 901, 2018 | 8078 | 2018 |
Relaxed phylogenetics and dating with confidence AJ Drummond, SYW Ho, MJ Phillips, A Rambaut PLoS biology 4 (5), e88, 2006 | 6673 | 2006 |
The proximal origin of SARS-CoV-2 KG Andersen, A Rambaut, WI Lipkin, EC Holmes, RF Garry Nature medicine 26 (4), 450-452, 2020 | 6547 | 2020 |
BEAST 2: a software platform for Bayesian evolutionary analysis R Bouckaert, J Heled, D Kühnert, T Vaughan, CH Wu, D Xie, MA Suchard, ... PLoS Comput Biol 10 (4), e1003537, 2014 | 6337 | 2014 |
Bayesian coalescent inference of past population dynamics from molecular sequences AJ Drummond, A Rambaut, B Shapiro, OG Pybus Molecular biology and evolution 22 (5), 1185-1192, 2005 | 3396 | 2005 |
SARS-CoV-2 variants, spike mutations and immune escape WT Harvey, AM Carabelli, B Jackson, RK Gupta, EC Thomson, ... Nature Reviews Microbiology 19 (7), 409-424, 2021 | 3174 | 2021 |
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ... PLoS computational biology 15 (4), e1006650, 2019 | 2996 | 2019 |
Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10 MA Suchard, P Lemey, G Baele, DL Ayres, AJ Drummond, A Rambaut Virus evolution 4 (1), vey016, 2018 | 2914 | 2018 |
Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic GJD Smith, D Vijaykrishna, J Bahl, SJ Lycett, M Worobey, OG Pybus, ... Nature 459 (7250), 1122-1125, 2009 | 2792 | 2009 |
A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology A Rambaut, EC Holmes, Á O’Toole, V Hill, JT McCrone, C Ruis, ... Nature microbiology 5 (11), 1403-1407, 2020 | 2660 | 2020 |
Pandemic potential of a strain of influenza A (H1N1): early findings C Fraser, CA Donnelly, S Cauchemez, WP Hanage, MD Van Kerkhove, ... science 324 (5934), 1557-1561, 2009 | 2552 | 2009 |
Se-Al: sequence alignment editor A Rambaut http://evolve. zoo. ox. ac. uk/, 1996 | 1962* | 1996 |
Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees A Rambaut, NC Grass Bioinformatics 13 (3), 235-238, 1997 | 1847 | 1997 |
Bayesian phylogeography finds its roots P Lemey, A Rambaut, AJ Drummond, MA Suchard PLoS computational biology 5 (9), e1000520, 2009 | 1801 | 2009 |
Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen) A Rambaut, TT Lam, L Max Carvalho, OG Pybus Virus evolution 2 (1), vew007, 2016 | 1761* | 2016 |
Genomics and epidemiology of the P. 1 SARS-CoV-2 lineage in Manaus, Brazil NR Faria, TA Mellan, C Whittaker, IM Claro, DS Candido, S Mishra, ... Science 372 (6544), 815-821, 2021 | 1581 | 2021 |