| Evaluation of cell type annotation R packages on single-cell RNA-seq data Q Huang, Y Liu, Y Du, LX Garmire Genomics, Proteomics and Bioinformatics 19 (2), 267-281, 2021 | 124 | 2021 |
| Evaluation of STAR and Kallisto on single cell RNA-Seq data alignment Y Du, Q Huang, C Arisdakessian, LX Garmire G3: Genes, Genomes, Genetics 10 (5), 1775-1783, 2020 | 61 | 2020 |
| ASGARD is a single-cell guided pipeline to aid repurposing of drugs B He, Y Xiao, H Liang, Q Huang, Y Du, Y Li, D Garmire, D Sun, ... Nature Communications 14 (1), 993, 2023 | 32 | 2023 |
| Lilikoi V2. 0: a deep learning–enabled, personalized pathway-based R package for diagnosis and prognosis predictions using metabolomics data X Fang, Y Liu, Z Ren, Y Du, Q Huang, LX Garmire Gigascience 10 (1), giaa162, 2021 | 17 | 2021 |
| A dual‐filtration system for single‐cell sequencing of circulating tumor cells and clusters in HCC VL Chen, Q Huang, R Harouaka, Y Du, AS Lok, ND Parikh, LX Garmire, ... Hepatology Communications 6 (6), 1482-1491, 2022 | 9 | 2022 |
| Deep learning and transfer learning identify breast cancer survival subtypes from single-cell imaging data S Yadav, S Zhou, B He, Y Du, LX Garmire Communications Medicine 3 (1), 187, 2023 | 7 | 2023 |
| Evaluation of Cell Type Deconvolution R Packages on Single Cell RNA-seq Data. Q Huang, Y Liu, Y Du, LX Garmire BioRxiv, 827139, 2019 | 2 | 2019 |
| Prediction of spontaneous preterm birth using supervised machine learning on metabolomic data: A case–cohort study Y Al Ghadban, Y Du, DS Charnock‐Jones, LX Garmire, GCS Smith, ... BJOG: An International Journal of Obstetrics & Gynaecology 131 (7), 908-916, 2024 | 1 | 2024 |
| Severe preeclampsia is not associated with significant DNA methylation changes but cell proportion changes in the cord blood-caution on the importance of confounding adjustment W Liu, X Yang, Z Mao, Y Du, C Lassiter, FM AlAkwaa, PA Benny, ... medRxiv, 2023 | 1 | 2023 |
| Multi-omics Analysis of Umbilical Cord Hematopoietic Stem Cells from a Multi-ethnic Cohort of Hawaii Reveals the Transgenerational Effect of Maternal Pre-Pregnancy Obesity Y Du, PA Benny, Y Shao, RJ Schlueter, A Gurary, A Lum-Jones, ... medRxiv, 2024 | | 2024 |
| Rescue Blood Contamination in scRNA-Seq Data by Originator, a Computational Deciphering Tool using Genetic and Contextual Information T Unjitwattana, Q Huang, Y Yang, Y Yang, M Zhou, Y Du, LX Garmire bioRxiv, 2024 | | 2024 |
| Single-cell RNA-Seq data have prevalent blood contamination but can be rescued by Originator, a computational tool separating single-cell RNA-Seq by genetic and contextual … T Unjitwattana, Q Huang, Y Yang, L Tao, Y Yang, M Zhou, Y Du, ... bioRxiv, 2024.04. 04.588144, 2024 | | 2024 |
| Prediction of spontaneous preterm birth using supervised machine learning on metabolomic data M Yasmina Al Ghadban, Y Du, DS Charnock-Jones, LX Garmire, ... | | |
