An objective comparison of cell-tracking algorithms V Ulman, M Maška, KEG Magnusson, O Ronneberger, C Haubold, ... Nature methods 14 (12), 1141-1152, 2017 | 584 | 2017 |
A benchmark for comparison of cell tracking algorithms M Maška, V Ulman, D Svoboda, P Matula, P Matula, C Ederra, A Urbiola, ... Bioinformatics 30 (11), 1609-1617, 2014 | 495 | 2014 |
The Cell Tracking Challenge: 10 years of objective benchmarking M Maška, V Ulman, P Delgado-Rodriguez, E Gómez-de-Mariscal, ... Nature Methods 20 (7), 1010-1020, 2023 | 74 | 2023 |
Regionalized tissue fluidization is required for epithelial gap closure during insect gastrulation A Jain, V Ulman, A Mukherjee, M Prakash, MB Cuenca, LG Pimpale, ... Nature communications 11 (1), 1-13, 2020 | 68 | 2020 |
MitoGen: A framework for generating 3D synthetic time-lapse sequences of cell populations in fluorescence microscopy D Svoboda, V Ulman IEEE transactions on medical imaging 36 (1), 310-321, 2016 | 64 | 2016 |
Virtual cell imaging: A review on simulation methods employed in image cytometry V Ulman, D Svoboda, M Nykter, M Kozubek, P Ruusuvuori Cytometry Part A 89 (12), 1057-1072, 2016 | 50 | 2016 |
Bioinformatic and image analyses of the cellular localization of the apoptotic proteins endonuclease G, AIF, and AMID during apoptosis in human cells M Vařecha, J Amrichová, M Zimmermann, V Ulman, E Lukášová, ... Apoptosis 12 (7), 1155-1171, 2007 | 45 | 2007 |
FiloGen: A Model-Based Generator of Synthetic 3D Time-Lapse Sequences of Single Motile Cells with Growing and Branching Filopodia DV Sorokin, I Peterlík, V Ulman, D Svoboda, T Nečasová, K Morgaenko, ... IEEE Transactions on Medical Imaging, 2018 | 42 | 2018 |
Generation of Synthetic Image Datasets for Time-Lapse Fluorescence Microscopy D Svoboda, V Ulman Proceedings of 9th International Conference on Image Analysis and Recognition, 2012 | 30 | 2012 |
Prediction of localization and interactions of apoptotic proteins M Vařecha, M Zimmermann, J Amrichová, V Ulman, P Matula, M Kozubek Journal of biomedical science 16 (1), 59, 2009 | 20 | 2009 |
Towards a Realistic Distribution of Cells in Synthetically Generated 3D Cell Populations D Svoboda, V Ulman Image Analysis and Processing–ICIAP 2013, 429-438, 2013 | 16 | 2013 |
Estimating Large Local Motion in Live-Cell Imaging Using Variational Optical Flow J Hubený, V Ulman, P Matula VISAPP 2007 Second International Conference On Computer Vision Theory And …, 2007 | 15 | 2007 |
Distinct patterns of histone methylation and acetylation in human interphase nuclei M Skalnikova, E Bártová, V Ulman, P Matula, D Svoboda, A Harnicarová, ... Physiological research 56 (6), 797, 2007 | 12 | 2007 |
TRAgen: A Tool for Generation of Synthetic Time-Lapse Image Sequences of Living Cells V Ulman, Z Orémuš, D Svoboda Image Analysis and Processing—ICIAP 2015, 623-634, 2015 | 11 | 2015 |
Model-based generation of synthetic 3D time-lapse sequences of motile cells with growing filopodia DV Sorokin, I Peterlik, V Ulman, D Svoboda, M Maška Biomedical Imaging (ISBI 2017), 2017 IEEE 14th International Symposium on …, 2017 | 10 | 2017 |
Virtual microscope interface to high resolution histological images J Feit, L Matyska, V Ulman, L Hejtmánek, H Jedličková, M Ježová, ... Diagnostic pathology 3 (Suppl 1), S10, 2008 | 10 | 2008 |
Automatic Fusion of Segmentation and Tracking Labels CE Akbaş, V Ulman, M Maška, F Jug, M Kozubek European Conference on Computer Vision, 446-454, 2018 | 9* | 2018 |
Generative modeling of living cells with SO (3)-equivariant implicit neural representations D Wiesner, J Suk, S Dummer, T Nečasová, V Ulman, D Svoboda, ... Medical Image Analysis 91, 102991, 2024 | 8 | 2024 |
Vascular network formation in silico using the extended cellular Potts model D Svoboda, V Ulman, P Kováč, B Šalingová, L Tesařová, IK Koutná, ... 2016 IEEE International Conference on Image Processing (ICIP), 3180-3183, 2016 | 8 | 2016 |
On Proper Simulation of Chromatin Structure in Static Images As Well As in Time-Lapse Sequences in Fluorescence Microscopy D Svoboda, V Ulman, I Peterlík International Symposium on BIOMEDICAL IMAGING: From Nano to Macro (ISBI), 2015 | 7 | 2015 |