Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss, and algae L Carretero-Paulet, A Galstyan, I Roig-Villanova, JF Martinez-Garcia, ... Plant physiology 153 (3), 1398-1412, 2010 | 590 | 2010 |
XMIPP: a new generation of an open-source image processing package for electron microscopy COS Sorzano, R Marabini, J Velázquez-Muriel, JR Bilbao-Castro, ... Journal of structural biology 148 (2), 194-204, 2004 | 543 | 2004 |
A clustering approach to multireference alignment of single-particle projections in electron microscopy COS Sorzano, JR Bilbao-Castro, Y Shkolnisky, M Alcorlo, R Melero, ... Journal of structural biology 171 (2), 197-206, 2010 | 232 | 2010 |
Marker-free image registration of electron tomography tilt-series COS Sorzano, C Messaoudi, M Eibauer, JR Bilbao-Castro, R Hegerl, ... BMC bioinformatics 10, 1-11, 2009 | 119 | 2009 |
Iterative elastic 3D-to-2D alignment method using normal modes for studying structural dynamics of large macromolecular complexes Q Jin, COS Sorzano, JM de La Rosa-Trevín, JR Bilbao-Castro, ... Structure 22 (3), 496-506, 2014 | 105 | 2014 |
Automatic particle selection from electron micrographs using machine learning techniques COS Sorzano, E Recarte, M Alcorlo, JR Bilbao-Castro, C San-Martín, ... Journal of structural biology 167 (3), 252-260, 2009 | 79 | 2009 |
A fast iterative convolution weighting approach for gridding-based direct Fourier three-dimensional reconstruction with correction for the contrast transfer function V Abrishami, JR Bilbao-Castro, J Vargas, R Marabini, JM Carazo, ... Ultramicroscopy 157, 79-87, 2015 | 29 | 2015 |
Eco-evolutionary spatial dynamics: rapid evolution and isolation explain food web persistence J Moya-Laraño, JR Bilbao-Castro, G Barrionuevo, D Ruiz-Lupión, ... Advances in ecological research 50, 75-143, 2014 | 29 | 2014 |
Parallelization of reconstruction algorithms in three-dimensional electron microscopy JR Bilbao-Castro, JM Carazo, I Garcia, JJ Fernández Applied mathematical modelling 30 (8), 688-701, 2006 | 24 | 2006 |
Exploiting desktop supercomputing for three-dimensional electron microscopy reconstructions using ART with blobs JR Bilbao-Castro, R Marabini, COS Sorzano, I García, JM Carazo, ... Journal of Structural Biology 165 (1), 19-26, 2009 | 23 | 2009 |
Parallel iterative reconstruction methods for structure determination of biological specimens by electron microscopy JR Bilbao-Castro, JM Carazo, I García, JJ Fernandez Proceedings 2003 International Conference on Image Processing (Cat. No …, 2003 | 18 | 2003 |
Phan3D: design of biological phantoms in 3D electron microscopy JR Bilbao-Castro, COS Sorzano, I García, JJ Fernández Bioinformatics 20 (17), 3286-3288, 2004 | 15 | 2004 |
Parameter optimization in 3D reconstruction on a large scale grid JR Bilbao-Castro, A Merino, I García, JM Carazo, JJ Fernández Parallel Computing 33 (4-5), 250-263, 2007 | 14 | 2007 |
XMSF: Structure-preserving noise reduction and pre-segmentation in microscope tomography JR Bilbao-Castro, COS Sorzano, I García, JJ Fernández Bioinformatics 26 (21), 2786-2787, 2010 | 13 | 2010 |
On the suitability of biological structure determination by electron microscopy to grid computing JJ Fernandez, JR Bilbao-Castro, R Marabini, JM Carazo, I Garcia New Generation Computing 23, 101-112, 2005 | 11 | 2005 |
Performance of Parallel 3 D Iterative Reconstruction Algorithms JR Bilbao-Castro, JM Carazo WSEAS Transactions on Biology and Biomedicine 1 (1), 112-119, 2004 | 11 | 2004 |
Image processing in electron tomography J Fernandez, J Agulleiro, J Bilbao-Castro, A Martínez, I García, ... Microscopy: science, technology, applications and education, 19-28, 2010 | 9 | 2010 |
Weaver: A multiagent, spatial-explicit and high-performance framework to study complex ecological networks JR Bilbao-Castro, G Barrionuevo, D Ruiz-Lupión, LG Casado, ... Highlights of Practical Applications of Agents, Multi-Agent Systems, and …, 2015 | 6 | 2015 |
Parallelization and comparison of 3d iterative reconstruction algorithms JR Bilbao-Castro, JM Carazo, JJ Fernandez, I García 12th Euromicro Conference on Parallel, Distributed and Network-Based …, 2004 | 6 | 2004 |
EGEETomo: a user-friendly, fault-tolerant and grid-enabled application for 3D reconstruction in electron tomography JR Bilbao-Castro, I García, JJ Fernández Bioinformatics 23 (24), 3391-3393, 2007 | 5 | 2007 |