| Lindane, kepone and pentachlorobenzene: chloropesticides banned by Stockholm convention R Madaj, E Sobiecka, H Kalinowska International journal of environmental science and technology 15, 471-480, 2018 | 54 | 2018 |
| Rossmann-toolbox: a deep learning-based protocol for the prediction and design of cofactor specificity in Rossmann fold proteins K Kamiński, J Ludwiczak, M Jasiński, A Bukala, R Madaj, K Szczepaniak, ... Briefings in bioinformatics 23 (1), bbab371, 2022 | 33 | 2022 |
| A program to automate the discovery of drugs for west nile and dengue virus—programmatic screening of over a billion compounds on pubchem, generation of drug leads and … B Geoffrey, A Sanker, R Madaj, MSV Tresanco, M Upadhyay, J Gracia Journal of Biomolecular Structure and Dynamics 40 (10), 4293-4300, 2022 | 17 | 2022 |
| Evaluation of the anti-diabetic activity of sea buckthorn pulp oils prepared with different extraction methods in human islet EndoC-betaH1 cells E Korkus, G Dąbrowski, M Szustak, S Czaplicki, R Madaj, A Chworoś, ... NFS Journal 27, 54-66, 2022 | 9 | 2022 |
| Escherichia coli tRNA 2-selenouridine synthase SelU selects its prenyl substrate to accomplish its enzymatic function P Szczupak, E Radzikowska-Cieciura, K Kulik, R Madaj, M Sierant, ... Bioorganic Chemistry 122, 105739, 2022 | 7 | 2022 |
| Utilisation of nitrocompounds R Madaj, H Kalinowska, E Sobiecka Biotechnology and Food Science 80 (2), 63-73, 2016 | 6 | 2016 |
| Target2DeNovoDrug: a novel programmatic tool for in silico-deep learning based de novo drug design for any target of interest R Madaj, B Geoffrey, A Sanker, PP Valluri Journal of Biomolecular Structure and Dynamics 40 (16), 7511-7516, 2022 | 5 | 2022 |
| In silico exploration of binding of selected bisphosphonate derivatives to placental alkaline phosphatase via docking and molecular dynamics R Madaj, R Pawlowska, A Chworos Journal of Molecular Graphics and Modelling 103, 107801, 2021 | 5 | 2021 |
| AlphaFold2 captures the conformational landscape of the HAMP signaling domain A Winski, J Ludwiczak, M Orlowska, R Madaj, K Kaminski, ... Protein Science 33 (1), e4846, 2024 | 4 | 2024 |
| Tissue-nonspecific alkaline phosphatase (TNAP) as the enzyme involved in the degradation of nucleotide analogues in the ligand docking and molecular dynamics approaches R Madaj, B Gostynski, R Pawlowska, A Chworos Biomolecules 11 (8), 1104, 2021 | 4 | 2021 |
| Automated in Silico identification of drug candidates for coronavirus through a novel programmatic tool and extensive computational (MD, DFT) studies of select drug candidates AS Ben Geoffrey, R Madaj, A Sanker, MSV Tresanco, HA Davidd, G Roy, ... | 4 | 2020 |
| Biodegradation of 3, 5-dinitrosalicylic acid by Phanerochaete chrysosporium R Madaj, H Kalinowska, W Sroczyński, J Szeląg, E Sobiecka Acta Universitatis Lodziensis. Folia Biologica et Oecologica, 14-22, 2018 | 3 | 2018 |
| Trans-palmitoleic acid, a dairy fat biomarker, stimulates insulin secretion and activates G protein-coupled receptors with a different mechanism from the cis isomer E Korkus, M Szustak, R Madaj, A Chworos, A Drzazga, M Koziołkiewicz, ... Food & Function 14 (14), 6496-6512, 2023 | 2 | 2023 |
| Target2DeNovoDrugPropMax : a novel programmatic tool incorporating deep learning and in silico methods for automated de novo drug design for any target of … R Madaj, B Geoffrey, A Sanker, PP Valluri bioRxiv, 2020.12. 11.421768, 2020 | 2 | 2020 |
| Target2drug: A Novel Programmatic Workflow to Automate in Silico Drug Discovery ASB Geoffrey, R Madaj, A Sanker, PP Valluri, J Gracia, H Singh | 2 | 2020 |
| Substrate Specificity of T7 RNA Polymerase toward Hypophosphoric Analogues of ATP R Pawlowska, A Graczyk, E Radzikowska-Cieciura, E Wielgus, R Madaj, ... ACS omega 9 (8), 9348-9356, 2024 | 1 | 2024 |
| Lysophosphatidylcholines Enriched with cis and trans Palmitoleic Acid Regulate Insulin Secretion via GPR119 Receptor M Szustak, E Korkus, R Madaj, A Chworos, G Dabrowski, S Czaplicki, ... ACS Medicinal Chemistry Letters 15 (2), 197-204, 2024 | 1 | 2024 |
| Novichok Nerve Agents as Inhibitors of Acetylcholinesterase—In Silico Study of Their Non-Covalent Binding Affinity R Madaj, B Gostyński, A Chworos, M Cypryk Molecules 29 (2), 338, 2024 | 1 | 2024 |
| QPoweredCompound2DeNovoDrugPropMax – a novel programmatic tool incorporating deep learning and in silico methods for automated in silico bio-activity … B Geoffrey AS, R Madaj, PP Valluri Journal of Biomolecular Structure and Dynamics 41 (5), 1790-1797, 2023 | 1 | 2023 |
| Batch Mode Reactor for 3,5-Dinitrosalicylic Acid Degradation by Phanerochaete chrysosporium R Madaj, W Sroczyński, M Sójka, TP Olejnik, E Sobiecka Processes 9 (1), 105, 2021 | 1 | 2021 |
