| In situ cryo-electron tomography reveals gradient organization of ribosome biogenesis in intact nucleoli PS Erdmann, Z Hou, S Klumpe, S Khavnekar, F Beck, F Wilfling, ... Nature Communications 12 (1), 5364, 2021 | 58 | 2021 |
| STOPGAP: a software package for subtomogram averaging and refinement W Wan, S Khavnekar, J Wagner, P Erdmann, W Baumeister Microscopy and Microanalysis 26 (S2), 2516-2516, 2020 | 29 | 2020 |
| Multishot tomography for high-resolution in situ subtomogram averaging S Khavnekar, W Wan, P Majumder, W Wietrzynski, PS Erdmann, ... Journal of Structural Biology 215 (1), 107911, 2023 | 23 | 2023 |
| Time-dependent X-ray diffraction studies on urea/hen egg white lysozyme complexes reveal structural changes that indicate onset of denaturation T Raskar, S Khavnekar, M Hosur Scientific Reports 6 (1), 32277, 2016 | 15 | 2016 |
| Routine collection of high-resolution cryo-EM datasets using 200 KV transmission electron microscope A Koh, S Khavnekar, W Yang, D Karia, D Cats, R van der Ploeg, F Grollios, ... JoVE (Journal of Visualized Experiments), e63519, 2022 | 9 | 2022 |
| STOPGAP: an open-source package for template matching, subtomogram alignment and classification W Wan, S Khavnekar, J Wagner Acta Crystallographica Section D: Structural Biology 80 (5), 2024 | 8 | 2024 |
| Optimizing Cryo-FIB lamellas for sub-5Å in situ structural biology S Khavnekar, V Vrbovská, M Zaoralová, R Kelley, F Beck, S Klumpe, ... BioRXiv, 2022.06. 16.496417, 2022 | 8 | 2022 |
| Deep reconstructing generative networks for visualizing dynamic biomolecules inside cells R Rangan, S Khavnekar, A Lerer, J Johnston, R Kelley, M Obr, A Kotecha, ... bioRxiv, 2023.08. 18.553799, 2023 | 7 | 2023 |
| TOMOMAN: Streamlining Cryo-electron Tomography and Subtomogram Averaging Workflows Using TOMOgram MANager S Khavnekar, P Erdmann, W Wan Microscopy and Microanalysis 29 (Supplement_1), 1020-1020, 2023 | 6 | 2023 |
| Conformational dynamics of Peb4 exhibit “mother’s arms” chain model: a molecular dynamics study SC Dantu, S Khavnekar, A Kale Journal of Biomolecular Structure and Dynamics 35 (10), 2186-2196, 2017 | 6 | 2017 |
| Structural insights into dynamics of RecU–HJ complex formation elucidates key role of NTR and stalk region toward formation of reactive state S Khavnekar, SC Dantu, S Sedelnikova, S Ayora, J Rafferty, A Kale Nucleic Acids Research 45 (2), 975-986, 2017 | 5 | 2017 |
| Volumetric macromolecule identification in cryo-electron tomograms using capsule networks N Hajarolasvadi, V Sunkara, S Khavnekar, F Beck, R Brandt, D Baum BMC bioinformatics 23 (1), 360, 2022 | 3 | 2022 |
| Towards the Visual Proteomics of C. reinhardtii using High-throughput Collaborative in situ Cryo-ET S Khavnekar, R Kelley, F Waltz, W Wietrzynski, X Zhang, M Obr, ... Microscopy and Microanalysis 29 (Supplement_1), 961-963, 2023 | 2 | 2023 |
| STOPGAP_refine: Tilt series refinement for high-resolution subtomogram averaging S Khavnekar, W Wan, P Erdmann, J Plitzko Microscopy and Microanalysis 27 (S1), 3240-3240, 2021 | 1 | 2021 |
| TOMOMAN: a software package for large scale cryo-electron tomography data preprocessing, community data sharing, and collaborative computing S Khavnekar, W Wan bioRxiv, 2024 | | 2024 |
| Abstract 1475 High-throughput Collaborative in situ Cryo-ET Enables the Molecular Atlas of C. reinhardtii S Khavnekar, M Obr, X Zhang, R Kelley, F Waltz, B Engel, J Plitzko, ... Journal of Biological Chemistry 300 (3), 2024 | | 2024 |
| Visual proteomics of C. reinhardtii using high-throughput collaborative in situ cryo-ET R Kelley, M Obr, X Zhang, S Khavnekar, J Plitzko, A Kotecha Biophysical Journal 123 (3), 6a-7a, 2024 | | 2024 |
| Structural Analysis of COPI Pathway in Chlamydomonas reinhardtii G Tagiltsev, R Kelley, X Zhang, S Khavnekar, A Kotecha, JM Plitzko, ... Microscopy and Microanalysis 29 (Supplement_1), 895-895, 2023 | | 2023 |
| Next generation sample preparation for cryo-ET–instruments, accessories and workflows JM Plitzko, S Klumpe, O Schioetz, S Khavnekar, J Brenner, C Kaiser | | |
