Steady-state and dynamic gene expression programs in Saccharomyces cerevisiae in response to variation in environmental nitrogen EM Airoldi, D Miller, R Athanasiadou, N Brandt, F Abdul-Rahman, ... Molecular biology of the cell 27 (8), 1383-1396, 2016 | 39 | 2016 |
A large accessory protein interactome is rewired across environments Z Liu, D Miller, F Li, X Liu, SF Levy Elife 9, e62365, 2020 | 31 | 2020 |
iSeq 2.0: A Modular and Interchangeable Toolkit for Interaction Screening in Yeast X Liu, Z Liu, AK Dziulko, F Li, D Miller, RD Morabito, D Francois, SF Levy Cell systems 8 (4), 338-344. e8, 2019 | 20 | 2019 |
Systematic identification of factors mediating accelerated mRNA degradation in response to changes in environmental nitrogen D Miller, N Brandt, D Gresham PLoS genetics 14 (5), e1007406, 2018 | 18 | 2018 |
Functional genomics and metabolomics advance the ethnobotany of the Samoan traditional medicine “matalafi” S Molimau-Samasoni, VH Woolner, ST Foliga, K Robichon, V Patel, ... Proceedings of the National Academy of Sciences 118 (45), e2100880118, 2021 | 16 | 2021 |
Growth Rate-Dependent Global Amplification of Gene Expression R Athanasiadou, B Neymotin, N Brandt, D Miller, D Tranchina, D Gresham BioRxiv, 044735, 2016 | 6 | 2016 |
Arrayed in vivo barcoding for multiplexed sequence verification of plasmid DNA and demultiplexing of pooled libraries W Li, D Miller, X Liu, L Tosi, L Chkaiban, H Mei, PH Hung, B Parekkadan, ... Nucleic Acids Research 52 (10), e47-e47, 2024 | | 2024 |
Chemical genomic analysis reveals the interplay between iron chelation, zinc homeostasis and retromer function in the bioactivity of an ethanol adduct of the feijoa fruit … M Mokhtari, P Amiri, D Miller, D Gresham, SJ Bloor, AB Munkacsi G3: Genes, Genomes, Genetics, jkae098, 2024 | | 2024 |
Genome-scale analysis of interactions between genetic perturbations and natural variation JJ Hale, T Matsui, I Goldstein, MN Mullis, KR Roy, CN Ville, D Miller, ... Nature Communications 15 (1), 4234, 2024 | | 2024 |
Pooled PPIseq: screening the SARS-CoV-2 and human interface with a scalable multiplexed protein-protein interaction assay platform D Miller, A Dziulko, S Levy bioRxiv, 2024.02. 13.580123, 2024 | | 2024 |
Correction for Molimau-Samasoni et al., Functional genomics and metabolomics advance the ethnobotany of the Samoan traditional medicine" matalafi": Functional genomics and … S Molimau-Samasoni, VH Woolner, ST Foliga, K Robichon, V Patel, ... Proceedings of the National Academy of Sciences of the United States of …, 2022 | | 2022 |
YPK9 and WHI2 Negatively Interact during Oxidative Stress F Joseph, D Miller, OV Evgrafov, WJ Chirico Microorganisms 9 (12), 2584, 2021 | | 2021 |
The Extent of mRNA Destabilization and Genetic Factors of Rapid GAP1 mRNA Clearance upon a Nitrogen Upshift. D Miller New York University, 2018 | | 2018 |
Global analysis of gene expression dynamics identifies factors required for accelerated mRNA degradation D Miller, N Brandt, D Gresham bioRxiv, 254920, 2018 | | 2018 |
Making spike-in transcripts for mRNA normalization D Miller | | 2016 |
Accelerated mRNA degradation contributes to gene expression remodeling during a nitrogen upshift D Miller, B Neymotin, D Gresham YEAST 32, S108-S108, 2015 | | 2015 |