Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0 L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... Nature protocols 14 (3), 639-702, 2019 | 1018 | 2019 |
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease A Noronha, J Modamio, Y Jarosz, E Guerard, N Sompairac, G Preciat, ... Nucleic acids research 47 (D1), D614-D624, 2019 | 317 | 2019 |
Evolution of resistance to a last-resort antibiotic in Staphylococcus aureus via bacterial competition G Koch, A Yepes, KU Förstner, C Wermser, ST Stengel, J Modamio, ... Cell 158 (5), 1060-1071, 2014 | 219 | 2014 |
Reproducible generation of human midbrain organoids for in vitro modeling of Parkinson’s disease SL Nickels, J Modamio, B Mendes-Pinheiro, AS Monzel, F Betsou, ... Stem Cell Research 46, 101870, 2020 | 87 | 2020 |
Parkinson's disease phenotypes in patient neuronal cultures and brain organoids improved by 2‐Hydroxypropyl‐β‐Cyclodextrin treatment J Jarazo, K Barmpa, J Modamio, C Saraiva, S Sabaté‐Soler, I Rosety, ... Movement Disorders 37 (1), 80-94, 2022 | 49 | 2022 |
Metabolic and signalling network maps integration: application to cross-talk studies and omics data analysis in cancer N Sompairac, J Modamio, E Barillot, RMT Fleming, A Zinovyev, ... BMC bioinformatics 20, 1-14, 2019 | 13 | 2019 |
Synaptic decline precedes dopaminergic neuronal loss in human midbrain organoids harboring a triplication of the SNCA gene J Modamio, C Saraiva, GG Giro, SL Nickels, J Jarazo, P Antony, P Barbuti, ... bioRxiv, 2021.07. 15.452499, 2021 | 9 | 2021 |
Danıelsdó ttir A Noronha, J Modamio, Y Jarosz, E Guerard, N Sompairac, G Preciat AD, Krecke, M., Merten, D., Haraldsdó ttir, HS, et al, 614-624, 2019 | 9 | 2019 |
Creation and analysis of biochemical constraint-based models: the COBRA toolbox v3. 0. arXiv L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... arXiv preprint arXiv:1710.04038, 2017 | 6 | 2017 |
Generalising from conventional pipelines using deep learning in high-throughput screening workflows B Garcia Santa Cruz, J Slter, G Gomez-Giro, C Saraiva, S Sabate-Soler, ... Scientific Reports 12 (1), 11465, 2022 | 3 | 2022 |
Mechanistic model-driven exometabolomic characterisation of human dopaminergic neuronal metabolism G Preciat, EL Moreno, AB Wegrzyn, CCW Willacey, J Modamio, ... bioRxiv, 2021.06. 30.450562, 2021 | 2 | 2021 |
783 Ohlsen, K., Foster, KR, and Lopez, D.(2014). Evolution of resistance to a last-784 resort antibiotic in Staphylococcus aureus via bacterial competition G Koch, A Yepes, KU Förstner, C Wermser, ST Stengel, J Modamio Cell 158 (785), 1060-1071, 0 | 2 | |
Generalising from Conventional Pipelines: A Case Study in Deep Learning-Based for High-Throughput Screening BG Santa Cruz, J Sölter, GG Giro, C Saraiva, S Sabaté-Soler, J Modamio, ... | | 2021 |
Generalising from Conventional Pipelines: A Case Study in Deep Learning-Based for High-Throughput Screening BGS Cruz, J Sölter, GG Giro, C Saraiva, S Sabaté-Soler, J Modamio, ... | | 2021 |
MitoMap, a multi-layered mitochondrial map compiling several levels of molecular interaction J Modamio, A Zâgare, N Sompairac, A Danielsdottir, L Wiltgen, M Krecke, ... | | |
Visualisation and map manipulation in Cell Designer (PART 1) J Modamio, A Danielsdottir, N Sompairac | | |