| TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions H Han, JW Cho, S Lee, A Yun, H Kim, D Bae, S Yang, CY Kim, M Lee, ... Nucleic acids research 46 (D1), D380-D386, 2018 | 1488 | 2018 |
| TRRUST: a reference database of human transcriptional regulatory interactions H Han, H Shim, D Shin, JE Shim, Y Ko, J Shin, H Kim, A Cho, E Kim, ... Scientific reports 5 (1), 11432, 2015 | 427 | 2015 |
| HumanNet v2: human gene networks for disease research S Hwang, CY Kim, S Yang, E Kim, T Hart, EM Marcotte, I Lee Nucleic acids research 47 (D1), D573-D580, 2019 | 198 | 2019 |
| COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH) S Yang, CY Kim, S Hwang, E Kim, H Kim, H Shim, I Lee Nucleic acids research 45 (D1), D389-D396, 2017 | 98 | 2017 |
| RiceNet v2: an improved network prioritization server for rice genes T Lee, T Oh, S Yang, J Shin, S Hwang, CY Kim, H Kim, H Shim, JE Shim, ... Nucleic acids research 43 (W1), W122-W127, 2015 | 87 | 2015 |
| HumanNet v3: an improved database of human gene networks for disease research CY Kim, S Baek, J Cha, S Yang, E Kim, EM Marcotte, T Hart, I Lee Nucleic acids research 50 (D1), D632-D639, 2022 | 76 | 2022 |
| Human reference gut microbiome catalog including newly assembled genomes from under-represented Asian metagenomes CY Kim, M Lee, S Yang, K Kim, D Yong, HR Kim, I Lee Genome Medicine 13, 1-20, 2021 | 62 | 2021 |
| A single gene of a commensal microbe affects host susceptibility to enteric infection MY Yoon, KB Min, KM Lee, Y Yoon, Y Kim, YT Oh, K Lee, J Chun, BY Kim, ... Nature communications 7 (1), 11606, 2016 | 39 | 2016 |
| HiFi metagenomic sequencing enables assembly of accurate and complete genomes from human gut microbiota CY Kim, J Ma, I Lee Nature communications 13 (1), 6367, 2022 | 37 | 2022 |
| Network-assisted investigation of virulence and antibiotic-resistance systems in Pseudomonas aeruginosa S Hwang, CY Kim, SG Ji, J Go, H Kim, S Yang, HJ Kim, A Cho, SS Yoon, ... Scientific reports 6 (1), 26223, 2016 | 36 | 2016 |
| GWAB: a web server for the network-based boosting of human genome-wide association data JE Shim, C Bang, S Yang, T Lee, S Hwang, CY Kim, UM Singh-Blom, ... Nucleic acids research 45 (W1), W154-W161, 2017 | 32 | 2017 |
| WheatNet: a genome-scale functional network for hexaploid bread wheat, Triticum aestivum T Lee, S Hwang, CY Kim, H Shim, H Kim, PC Ronald, EM Marcotte, I Lee Molecular plant 10 (8), 1133-1136, 2017 | 27 | 2017 |
| Function-driven discovery of disease genes in zebrafish using an integrated genomics big data resource H Shim, JH Kim, CY Kim, S Hwang, H Kim, S Yang, JE Lee, I Lee Nucleic acids research 44 (20), 9611-9623, 2016 | 27 | 2016 |
| FlyNet: a versatile network prioritization server for the Drosophila community J Shin, S Yang, E Kim, CY Kim, H Shim, A Cho, H Kim, S Hwang, JE Shim, ... Nucleic acids research 43 (W1), W91-W97, 2015 | 17 | 2015 |
| Network integrative genomic and transcriptomic analysis of carbapenem-resistant Klebsiella pneumoniae strains identifies genes for antibiotic resistance and virulence M Lee, NA Pinto, CY Kim, S Yang, R D’Souza, D Yong, I Lee Msystems 4 (4), 10.1128/msystems. 00202-19, 2019 | 16 | 2019 |
| Network-based genetic investigation of virulence-associated phenotypes in methicillin-resistant Staphylococcus aureus CY Kim, M Lee, K Lee, SS Yoon, I Lee Scientific reports 8 (1), 10796, 2018 | 8 | 2018 |
| Functional gene networks based on the gene neighborhood in metagenomes CY Kim, I Lee Animal Cells and Systems 21 (5), 301-306, 2017 | 8 | 2017 |
| Human reference gut microbiome comprising 5,414 prokaryotic species, including newly assembled genomes from under-represented Asian metagenomes CY Kim, M Lee, S Yang, K Kim, D Yong, HR Kim, I Lee bioRxiv, 2020.11. 09.375873, 2020 | 2 | 2020 |
| MRGM: a mouse reference gut microbiome reveals a large functional discrepancy for gut bacteria of the same genus between mice and humans N Kim, CY Kim, S Yang, D Park, SJ Ha, I Lee BioRxiv, 2021.10. 24.465599, 2021 | 1 | 2021 |
| Refined Enterotyping Reveals Dysbiosis in Global Fecal Metagenomes MI Keller, S Nishijima, D Podlesny, CY Kim, SM Robbani, C Schudoma, ... bioRxiv, 2024.08. 13.607711, 2024 | | 2024 |
